Analysis of interatomic Contacts of Structural Units in PDB entry:
7VNO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VNO entry

There are 2 chains in PDB entry 7VNO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3HIS 454
B
 LEU 3HIS 454
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 7VNO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
60 65Right-handed alpha
Helix 3
AA3
A
72 84Right-handed alpha
Helix 4
AA4
A
96 110Right-handed alpha
Helix 5
AA5
A
123 140Right-handed alpha
Helix 6
AA6
A
155 162Right-handed alpha
Helix 7
AA7
A
165 170Right-handed 310
Helix 8
AA8
A
199 215Right-handed alpha
Helix 9
AA9
A
221 223Right-handed 310
Helix 10
AB1
A
245 257Right-handed alpha
Helix 11
AB2
A
277 283Right-handed 310
Helix 12
AB3
A
294 297Right-handed 310
Helix 13
AB4
A
309 311Right-handed 310
Helix 14
AB5
A
325 341Right-handed alpha
Helix 15
AB6
A
342 365Right-handed alpha
Helix 16
AB7
A
392 406Right-handed alpha
Helix 17
AB8
A
427 450Right-handed alpha
Helix 18
AB9
B
12 26Right-handed alpha
Helix 19
AC1
B
60 65Right-handed alpha
Helix 20
AC2
B
72 84Right-handed alpha
Helix 21
AC3
B
96 110Right-handed alpha
Helix 22
AC4
B
123 140Right-handed alpha
Helix 23
AC5
B
157 162Right-handed alpha
Helix 24
AC6
B
165 170Right-handed 310
Helix 25
AC7
B
199 215Right-handed alpha
Helix 26
AC8
B
221 223Right-handed 310
Helix 27
AC9
B
245 257Right-handed alpha
Helix 28
AD1
B
277 283Right-handed 310
Helix 29
AD2
B
294 297Right-handed 310
Helix 30
AD3
B
309 311Right-handed 310
Helix 31
AD4
B
325 341Right-handed alpha
Helix 32
AD5
B
342 365Right-handed alpha
Helix 33
AD6
B
392 406Right-handed alpha
Helix 34
AD7
B
427 450Right-handed alpha
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There are 6 sheets in PDB entry 7VNO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
47 50anti-parallel
Strand 3
A
55 58anti-parallel
Strand 4
A
408 409parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 121first strand
Strand 2
A
302 307anti-parallel
Strand 3
A
288 292anti-parallel
Strand 4
A
260 264parallel
Strand 5
A
225 230parallel
Strand 6
A
143 147parallel
Strand 7
A
179 182parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 374first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
417 420anti-parallel
Strand 4
A
411 413anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 44first strand
Strand 2
B
47 50anti-parallel
Strand 3
B
55 58anti-parallel
Strand 4
B
408 409parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 121first strand
Strand 2
B
302 307anti-parallel
Strand 3
B
288 292anti-parallel
Strand 4
B
260 264parallel
Strand 5
B
225 230parallel
Strand 6
B
143 147parallel
Strand 7
B
179 182parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 374first strand
Strand 2
B
377 382anti-parallel
Strand 3
B
417 420anti-parallel
Strand 4
B
411 413anti-parallel
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