Analysis of interatomic Contacts of Structural Units in PDB entry:
7VNR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VNR entry

There are 8 chains in PDB entry 7VNR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 74	GLY 588
C	SER 74	GLY 588
E	SER 74	GLY 588
G	SER 74	GLY 588
B	GLU 7	ALA 147
D	GLU 7	ALA 147
F	GLU 7	ALA 147
H	GLU 7	ALA 147

There are 84 helices in PDB entry 7VNR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	93	Right-handed alpha
Helix 2	AA2	A	99	119	Right-handed alpha
Helix 3	AA3	A	126	154	Right-handed alpha
Helix 4	AA4	A	162	170	Right-handed alpha
Helix 5	AA5	A	175	190	Right-handed alpha
Helix 6	AA6	A	200	216	Right-handed alpha
Helix 7	AA7	A	221	234	Right-handed alpha
Helix 8	AA8	A	234	261	Right-handed alpha
Helix 9	AA9	A	269	282	Right-handed alpha
Helix 10	AB1	A	293	334	Right-handed alpha
Helix 11	AB2	A	339	355	Right-handed alpha
Helix 12	AB3	A	533	552	Right-handed alpha
Helix 13	AB4	A	557	586	Right-handed alpha
Helix 14	AB5	C	75	93	Right-handed alpha
Helix 15	AB6	C	99	119	Right-handed alpha
Helix 16	AB7	C	126	154	Right-handed alpha
Helix 17	AB8	C	162	170	Right-handed alpha
Helix 18	AB9	C	175	190	Right-handed alpha
Helix 19	AC1	C	200	216	Right-handed alpha
Helix 20	AC2	C	221	234	Right-handed alpha
Helix 21	AC3	C	234	261	Right-handed alpha
Helix 22	AC4	C	269	282	Right-handed alpha
Helix 23	AC5	C	293	334	Right-handed alpha
Helix 24	AC6	C	339	355	Right-handed alpha
Helix 25	AC7	C	533	554	Right-handed alpha
Helix 26	AC8	C	557	586	Right-handed alpha
Helix 27	AC9	E	75	93	Right-handed alpha
Helix 28	AD1	E	99	119	Right-handed alpha
Helix 29	AD2	E	126	154	Right-handed alpha
Helix 30	AD3	E	162	170	Right-handed alpha
Helix 31	AD4	E	175	190	Right-handed alpha
Helix 32	AD5	E	200	216	Right-handed alpha
Helix 33	AD6	E	221	234	Right-handed alpha
Helix 34	AD7	E	234	261	Right-handed alpha
Helix 35	AD8	E	269	282	Right-handed alpha
Helix 36	AD9	E	293	335	Right-handed alpha
Helix 37	AE1	E	339	355	Right-handed alpha
Helix 38	AE2	E	533	554	Right-handed alpha
Helix 39	AE3	E	557	586	Right-handed alpha
Helix 40	AE4	G	75	93	Right-handed alpha
Helix 41	AE5	G	99	119	Right-handed alpha
Helix 42	AE6	G	126	154	Right-handed alpha
Helix 43	AE7	G	162	170	Right-handed alpha
Helix 44	AE8	G	175	190	Right-handed alpha
Helix 45	AE9	G	200	216	Right-handed alpha
Helix 46	AF1	G	221	234	Right-handed alpha
Helix 47	AF2	G	234	261	Right-handed alpha
Helix 48	AF3	G	269	282	Right-handed alpha
Helix 49	AF4	G	293	334	Right-handed alpha
Helix 50	AF5	G	339	355	Right-handed alpha
Helix 51	AF6	G	533	554	Right-handed alpha
Helix 52	AF7	G	557	586	Right-handed alpha
Helix 53	AF8	B	8	20	Right-handed alpha
Helix 54	AF9	B	28	39	Right-handed alpha
Helix 55	AG1	B	44	54	Right-handed alpha
Helix 56	AG2	B	65	75	Right-handed alpha
Helix 57	AG3	B	78	92	Right-handed alpha
Helix 58	AG4	B	102	112	Right-handed alpha
Helix 59	AG5	B	117	128	Right-handed alpha
Helix 60	AG6	B	138	146	Right-handed alpha
Helix 61	AG7	D	8	20	Right-handed alpha
Helix 62	AG8	D	28	39	Right-handed alpha
Helix 63	AG9	D	44	54	Right-handed alpha
Helix 64	AH1	D	65	75	Right-handed alpha
Helix 65	AH2	D	78	92	Right-handed alpha
Helix 66	AH3	D	102	112	Right-handed alpha
Helix 67	AH4	D	117	128	Right-handed alpha
Helix 68	AH5	D	138	146	Right-handed alpha
Helix 69	AH6	F	8	20	Right-handed alpha
Helix 70	AH7	F	28	39	Right-handed alpha
Helix 71	AH8	F	44	54	Right-handed alpha
Helix 72	AH9	F	65	75	Right-handed alpha
Helix 73	AI1	F	78	92	Right-handed alpha
Helix 74	AI2	F	102	112	Right-handed alpha
Helix 75	AI3	F	117	128	Right-handed alpha
Helix 76	AI4	F	138	146	Right-handed alpha
Helix 77	AI5	H	8	20	Right-handed alpha
Helix 78	AI6	H	28	39	Right-handed alpha
Helix 79	AI7	H	44	54	Right-handed alpha
Helix 80	AI8	H	65	75	Right-handed alpha
Helix 81	AI9	H	78	92	Right-handed alpha
Helix 82	AJ1	H	102	112	Right-handed alpha
Helix 83	AJ2	H	117	128	Right-handed alpha
Helix 84	AJ3	H	138	146	Right-handed alpha

There are 8 sheets in PDB entry 7VNR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	63	64	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	101	first strand
Strand 2	B	135	137	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	27	first strand
Strand 2	D	63	64	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	135	137	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	27	first strand
Strand 2	F	63	64	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	101	first strand
Strand 2	F	135	137	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	27	first strand
Strand 2	H	63	64	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	101	first strand
Strand 2	H	135	137	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VNR

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VNR