Analysis of interatomic Contacts of Structural Units in PDB entry:
7VO9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VO9 entry

There are 6 chains in PDB entry 7VO9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	C 1	C 43
B	G 42	G 84
G	PRO 6	ALA 136
H	PRO 6	ALA 136
M	PRO 6	ALA 136
N	PRO 6	ALA 136

There are 20 helices in PDB entry 7VO9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	13	26	Right-handed alpha
Helix 2	AA2	G	31	43	Right-handed alpha
Helix 3	AA3	G	47	62	Right-handed alpha
Helix 4	AA4	G	101	116	Right-handed alpha
Helix 5	AA5	G	131	135	Right-handed alpha
Helix 6	AA6	H	13	26	Right-handed alpha
Helix 7	AA7	H	32	43	Right-handed alpha
Helix 8	AA8	H	47	62	Right-handed alpha
Helix 9	AA9	H	101	116	Right-handed alpha
Helix 10	AB1	H	131	135	Right-handed alpha
Helix 11	AB2	M	13	26	Right-handed alpha
Helix 12	AB3	M	31	43	Right-handed alpha
Helix 13	AB4	M	47	62	Right-handed alpha
Helix 14	AB5	M	101	116	Right-handed alpha
Helix 15	AB6	M	130	135	Right-handed alpha
Helix 16	AB7	N	13	26	Right-handed alpha
Helix 17	AB8	N	32	43	Right-handed alpha
Helix 18	AB9	N	47	62	Right-handed alpha
Helix 19	AC1	N	101	116	Right-handed alpha
Helix 20	AC2	N	130	135	Right-handed alpha

There are 8 sheets in PDB entry 7VO9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	68	first strand
Strand 2	G	74	77	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	98	first strand
Strand 2	G	87	90	anti-parallel
Strand 3	G	117	130	parallel
Strand 4	H	117	130	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	74	78	anti-parallel
Strand 3	H	64	68	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	89	first strand
Strand 2	H	96	99	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	64	68	first strand
Strand 2	M	74	78	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	96	99	first strand
Strand 2	M	86	89	anti-parallel
Strand 3	M	125	129	parallel
Strand 4	N	119	123	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	30	31	first strand
Strand 2	N	74	78	anti-parallel
Strand 3	N	64	68	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	95	99	first strand
Strand 2	N	86	90	anti-parallel
Strand 3	N	125	127	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VO9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VO9