Analysis of interatomic Contacts of Structural Units in PDB entry:
7VOH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VOH entry

There are 2 chains in PDB entry 7VOH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 5GLU 525
B
 LEU 5GLU 525
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 7VOH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 46Right-handed alpha
Helix 2
AA2
A
75 78Right-handed 310
Helix 3
AA3
A
79 93Right-handed alpha
Helix 4
AA4
A
110 117Right-handed alpha
Helix 5
AA5
A
177 193Right-handed alpha
Helix 6
AA6
A
203 207Right-handed 310
Helix 7
AA7
A
228 233Right-handed 310
Helix 8
AA8
A
243 256Right-handed alpha
Helix 9
AA9
A
271 279Right-handed alpha
Helix 10
AB1
A
301 311Right-handed alpha
Helix 11
AB2
A
333 338Right-handed alpha
Helix 12
AB3
A
339 357Right-handed alpha
Helix 13
AB4
A
366 370Right-handed 310
Helix 14
AB5
A
383 390Right-handed alpha
Helix 15
AB6
A
396 400Right-handed 310
Helix 16
AB7
A
426 429Right-handed 310
Helix 17
AB8
A
430 437Right-handed alpha
Helix 18
AB9
A
440 455Right-handed alpha
Helix 19
AC1
A
455 460Right-handed alpha
Helix 20
AC2
B
17 21Right-handed 310
Helix 21
AC3
B
31 39Right-handed alpha
Helix 22
AC4
B
39 46Right-handed alpha
Helix 23
AC5
B
79 93Right-handed alpha
Helix 24
AC6
B
110 117Right-handed alpha
Helix 25
AC7
B
177 193Right-handed alpha
Helix 26
AC8
B
203 207Right-handed 310
Helix 27
AC9
B
228 233Right-handed 310
Helix 28
AD1
B
243 256Right-handed alpha
Helix 29
AD2
B
272 279Right-handed alpha
Helix 30
AD3
B
301 312Right-handed alpha
Helix 31
AD4
B
332 336Right-handed 310
Helix 32
AD5
B
342 357Right-handed alpha
Helix 33
AD6
B
377 381Right-handed 310
Helix 34
AD7
B
383 390Right-handed alpha
Helix 35
AD8
B
396 400Right-handed 310
Helix 36
AD9
B
426 429Right-handed 310
Helix 37
AE1
B
430 436Right-handed alpha
Helix 38
AE2
B
440 454Right-handed alpha
Helix 39
AE3
B
455 461Right-handed alpha
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There are 9 sheets in PDB entry 7VOH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
49 52parallel
Strand 3
A
96 101parallel
Strand 4
A
198 201parallel
Strand 5
A
262 266parallel
Strand 6
A
288 290parallel
Strand 7
A
320 323parallel
Strand 8
A
360 364parallel
Strand 9
A
12 16parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 57first strand
Strand 2
A
69 73anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
160 163anti-parallel
Strand 3
A
152 155anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 469first strand
Strand 2
A
472 479anti-parallel
Strand 3
A
482 489anti-parallel
Strand 4
A
521 525anti-parallel
Strand 5
A
503 508anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 496first strand
Strand 2
A
515 516anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 16first strand
Strand 2
B
49 52parallel
Strand 3
B
96 101parallel
Strand 4
B
198 201parallel
Strand 5
B
262 266parallel
Strand 6
B
288 290parallel
Strand 7
B
320 323parallel
Strand 8
B
360 364parallel
Strand 9
B
12 16parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
69 73anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
160 163anti-parallel
Strand 3
B
152 155anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 469first strand
Strand 2
B
472 479anti-parallel
Strand 3
B
482 489anti-parallel
Strand 4
B
521 524anti-parallel
Strand 5
B
504 508anti-parallel
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