Analysis of interatomic Contacts of Structural Units in PDB entry:
7VOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VOI entry

There are 3 chains in PDB entry 7VOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 10GLU 280
A
 HIS 1089SER 1317
C
 ALA 37PRO 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7VOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
19 34Right-handed alpha
Helix 2
AA2
B
59 72Right-handed alpha
Helix 3
AA3
B
109 120Right-handed alpha
Helix 4
AA4
B
122 130Right-handed alpha
Helix 5
AA5
B
132 142Right-handed alpha
Helix 6
AA6
B
158 171Right-handed alpha
Helix 7
AA7
B
177 189Right-handed alpha
Helix 8
AA8
B
195 199Right-handed alpha
Helix 9
AA9
B
200 202Right-handed 310
Helix 10
AB1
B
208 216Right-handed alpha
Helix 11
AB2
B
226 243Right-handed alpha
Helix 12
AB3
B
251 256Right-handed alpha
Helix 13
AB4
A
1092 1105Right-handed alpha
Helix 14
AB5
A
1110 1122Right-handed alpha
Helix 15
AB6
A
1126 1138Right-handed alpha
Helix 16
AB7
A
1145 1157Right-handed alpha
Helix 17
AB8
A
1158 1178Right-handed alpha
Helix 18
AB9
A
1185 1203Right-handed alpha
Helix 19
AC1
A
1216 1228Right-handed alpha
Helix 20
AC2
A
1228 1244Right-handed alpha
Helix 21
AC3
A
1245 1249Right-handed 310
Helix 22
AC4
A
1256 1271Right-handed alpha
Helix 23
AC5
A
1276 1290Right-handed alpha
Helix 24
AC6
A
1307 1312Right-handed 310
Helix 25
AC7
C
51 55Right-handed 310
Helix 26
AC8
C
72 78Right-handed 310
Helix 27
AC9
C
95 101Right-handed 310
Helix 28
AD1
C
118 124Right-handed 310
Helix 29
AD2
C
138 147Right-handed alpha
Helix 30
AD3
C
149 161Right-handed alpha
Helix 31
AD4
C
211 216Right-handed alpha
Helix 32
AD5
C
216 230Right-handed alpha
Helix 33
AD6
C
508 512Right-handed 310
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There are 2 sheets in PDB entry 7VOI. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 15first strand
Strand 2
B
94 98parallel
Strand 3
B
76 82anti-parallel
Strand 4
B
36 42anti-parallel
Strand 5
B
152 155parallel
Strand 6
B
192 194parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
C
38 41anti-parallel
Strand 3
C
60 62parallel
Strand 4
C
83 85parallel
Strand 5
C
106 108parallel
Strand 6
C
129 131parallel
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