Analysis of interatomic Contacts of Structural Units in PDB entry:
7VOK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VOK entry

There are 4 chains in PDB entry 7VOK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 10	LYS 396
B	LYS 10	LYS 396
C	LYS 10	LYS 396
D	LYS 10	GLN 163

There are 34 helices in PDB entry 7VOK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	39	Right-handed alpha
Helix 2	AA2	A	48	54	Right-handed alpha
Helix 3	AA3	A	86	97	Right-handed alpha
Helix 4	AA4	A	115	128	Right-handed alpha
Helix 5	AA5	A	145	158	Right-handed alpha
Helix 6	AA6	A	183	201	Right-handed alpha
Helix 7	AA7	A	285	289	Right-handed 310
Helix 8	AA8	A	315	319	Right-handed 310
Helix 9	AA9	B	24	40	Right-handed alpha
Helix 10	AB1	B	48	54	Right-handed alpha
Helix 11	AB2	B	86	97	Right-handed alpha
Helix 12	AB3	B	115	128	Right-handed alpha
Helix 13	AB4	B	145	163	Right-handed alpha
Helix 14	AB5	B	175	182	Right-handed alpha
Helix 15	AB6	B	183	201	Right-handed alpha
Helix 16	AB7	B	285	289	Right-handed 310
Helix 17	AB8	C	24	38	Right-handed alpha
Helix 18	AB9	C	48	54	Right-handed alpha
Helix 19	AC1	C	86	96	Right-handed alpha
Helix 20	AC2	C	115	128	Right-handed alpha
Helix 21	AC3	C	145	163	Right-handed alpha
Helix 22	AC4	C	177	182	Right-handed alpha
Helix 23	AC5	C	183	201	Right-handed alpha
Helix 24	AC6	C	285	289	Right-handed 310
Helix 25	AC7	C	315	319	Right-handed 310
Helix 26	AC8	D	24	37	Right-handed alpha
Helix 27	AC9	D	48	54	Right-handed alpha
Helix 28	AD1	D	86	96	Right-handed alpha
Helix 29	AD2	D	115	129	Right-handed alpha
Helix 30	AD3	D	146	163	Right-handed alpha
Helix 31	AD4	D	175	181	Right-handed alpha
Helix 32	AD5	D	187	201	Right-handed alpha
Helix 33	AD6	D	285	289	Right-handed 310
Helix 34	AD7	D	315	319	Right-handed 310

There are 22 sheets in PDB entry 7VOK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	73	first strand
Strand 2	A	78	83	anti-parallel
Strand 3	A	12	19	parallel
Strand 4	A	104	109	parallel
Strand 5	A	133	138	parallel
Strand 6	A	171	173	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	63	66	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	232	first strand
Strand 2	A	276	282	anti-parallel
Strand 3	A	256	262	anti-parallel
Strand 4	A	243	246	anti-parallel
Strand 5	A	295	296	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	239	first strand
Strand 2	A	270	271	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	313	first strand
Strand 2	A	358	370	anti-parallel
Strand 3	A	339	345	anti-parallel
Strand 4	A	332	334	anti-parallel
Strand 5	A	376	381	anti-parallel
Strand 6	A	384	395	anti-parallel
Strand 7	A	303	313	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	78	83	parallel
Strand 3	B	68	73	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	19	first strand
Strand 2	B	104	107	parallel
Strand 3	B	133	137	parallel
Strand 4	B	171	173	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	63	65	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	215	first strand
Strand 2	B	294	296	anti-parallel
Strand 3	B	245	247	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	276	282	anti-parallel
Strand 4	B	257	262	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	313	first strand
Strand 2	B	358	370	anti-parallel
Strand 3	B	339	345	anti-parallel
Strand 4	B	332	334	anti-parallel
Strand 5	B	376	381	anti-parallel
Strand 6	B	384	395	anti-parallel
Strand 7	B	303	313	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	73	first strand
Strand 2	C	78	83	anti-parallel
Strand 3	C	12	19	parallel
Strand 4	C	104	109	parallel
Strand 5	C	133	138	parallel
Strand 6	C	171	173	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	63	65	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	215	first strand
Strand 2	C	294	296	anti-parallel
Strand 3	C	243	247	anti-parallel
Strand 4	C	256	262	anti-parallel
Strand 5	C	276	281	anti-parallel
Strand 6	C	226	232	anti-parallel
Strand 7	C	218	222	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	270	271	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	313	first strand
Strand 2	C	358	370	anti-parallel
Strand 3	C	338	345	anti-parallel
Strand 4	C	332	335	anti-parallel
Strand 5	C	376	381	anti-parallel
Strand 6	C	384	395	anti-parallel
Strand 7	C	303	313	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	73	first strand
Strand 2	D	78	83	anti-parallel
Strand 3	D	12	19	parallel
Strand 4	D	103	107	parallel
Strand 5	D	132	136	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	63	64	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	215	first strand
Strand 2	D	294	296	anti-parallel
Strand 3	D	242	247	anti-parallel
Strand 4	D	255	263	anti-parallel
Strand 5	D	276	282	anti-parallel
Strand 6	D	226	232	anti-parallel
Strand 7	D	218	222	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	215	first strand
Strand 2	D	294	296	anti-parallel
Strand 3	D	242	247	anti-parallel
Strand 4	D	255	263	anti-parallel
Strand 5	D	266	268	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	239	first strand
Strand 2	D	270	271	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	313	first strand
Strand 2	D	358	370	anti-parallel
Strand 3	D	338	345	anti-parallel
Strand 4	D	332	335	anti-parallel
Strand 5	D	376	381	anti-parallel
Strand 6	D	384	395	anti-parallel
Strand 7	D	303	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VOK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VOK