Analysis of interatomic Contacts of Structural Units in PDB entry:
7VOO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VOO entry

There are 2 chains in PDB entry 7VOO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 27	GLU 974
A	ASN 976	GLU 1335

There are 18 helices in PDB entry 7VOO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	601	608	Right-handed alpha
Helix 2	AA2	A	616	622	Right-handed alpha
Helix 3	AA3	A	665	672	Right-handed alpha
Helix 4	AA4	A	960	966	Right-handed 310
Helix 5	AA5	A	972	993	Right-handed alpha
Helix 6	AA6	A	997	1016	Right-handed alpha
Helix 7	AA7	A	1030	1034	Right-handed 310
Helix 8	AA8	A	1039	1053	Right-handed alpha
Helix 9	AA9	A	1059	1071	Right-handed alpha
Helix 10	AB1	A	1097	1112	Right-handed alpha
Helix 11	AB2	A	1118	1138	Right-handed alpha
Helix 12	AB3	A	1143	1157	Right-handed alpha
Helix 13	AB4	A	1159	1173	Right-handed alpha
Helix 14	AB5	A	1204	1218	Right-handed alpha
Helix 15	AB6	A	1224	1241	Right-handed alpha
Helix 16	AB7	A	1243	1247	Right-handed 310
Helix 17	AB8	A	1251	1269	Right-handed alpha
Helix 18	AB9	A	1293	1297	Right-handed 310

There are 24 sheets in PDB entry 7VOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	89	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	A	31	36	anti-parallel
Strand 4	A	675	679	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	59	63	anti-parallel
Strand 3	A	102	108	anti-parallel
Strand 4	A	115	119	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	122	123	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	147	151	anti-parallel
Strand 3	A	187	189	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	138	first strand
Strand 2	A	214	221	parallel
Strand 3	A	203	208	anti-parallel
Strand 4	A	164	168	anti-parallel
Strand 5	A	174	178	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	181	182	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	250	252	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	239	first strand
Strand 2	A	342	343	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	292	first strand
Strand 2	A	264	270	anti-parallel
Strand 3	A	318	324	anti-parallel
Strand 4	A	335	337	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	354	first strand
Strand 2	A	365	372	anti-parallel
Strand 3	A	404	409	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	359	first strand
Strand 2	A	445	450	parallel
Strand 3	A	416	422	anti-parallel
Strand 4	A	383	388	anti-parallel
Strand 5	A	396	398	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	461	first strand
Strand 2	A	478	481	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	476	first strand
Strand 2	A	526	528	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	512	513	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	509	first strand
Strand 2	A	497	501	anti-parallel
Strand 3	A	537	544	anti-parallel
Strand 4	A	552	559	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	571	first strand
Strand 2	A	584	588	anti-parallel
Strand 3	A	751	754	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	745	first strand
Strand 2	A	594	599	anti-parallel
Strand 3	A	767	769	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	792	797	first strand
Strand 2	A	808	816	anti-parallel
Strand 3	A	852	862	anti-parallel
Strand 4	A	834	838	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	801	803	first strand
Strand 2	A	904	906	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	847	848	first strand
Strand 2	A	822	828	anti-parallel
Strand 3	A	870	876	anti-parallel
Strand 4	A	897	901	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	910	915	first strand
Strand 2	A	1322	1332	anti-parallel
Strand 3	A	918	920	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	910	915	first strand
Strand 2	A	1322	1332	anti-parallel
Strand 3	A	945	950	anti-parallel
Strand 4	A	1301	1304	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	925	931	first strand
Strand 2	A	1312	1318	anti-parallel
Strand 3	A	1276	1282	anti-parallel
Strand 4	A	1288	1290	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1175	1176	first strand
Strand 2	A	1181	1182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VOO

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VOO