Analysis of interatomic Contacts of Structural Units in PDB entry:
7VOY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VOY entry

There are 37 chains in PDB entry 7VOY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 54
B	SER 5	PHE 49
D	MET 1	VAL 54
E	LEU 7	PHE 49
F	MET 1	VAL 54
G	LEU 7	PHE 49
I	MET 1	VAL 54
J	LEU 7	PHE 49
K	MET 1	VAL 54
N	LEU 7	PHE 49
O	MET 1	VAL 54
P	LEU 7	PHE 49
Q	MET 1	VAL 54
R	LEU 7	PHE 49
S	MET 1	VAL 54
T	LEU 7	PHE 49
U	MET 1	VAL 54
V	LEU 7	PHE 49
W	MET 1	VAL 54
X	LEU 7	PHE 49
Y	MET 1	VAL 54
Z	GLY 8	PHE 49
1	SER 2	VAL 54
2	THR 10	PHE 49
7	MET 1	ILE 46
8	ASP 6	PHE 49
9	MET 1	VAL 54
0	ASP 6	PHE 49
4	MET 1	VAL 54
t	SER 5	PHE 49
6	MET 1	VAL 54
5	SER 5	PHE 49
C	MET 1	VAL 54
3	SER 5	PHE 49
L	ALA 1	GLY 281
M	GLU 2	LEU 306
H	MET 1	LYS 247

There are106 helices in PDB entry 7VOY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	11	Right-handed alpha
Helix 2	AA2	A	12	38	Right-handed alpha
Helix 3	AA3	A	42	51	Right-handed alpha
Helix 4	AA4	B	13	46	Right-handed alpha
Helix 5	AA5	D	5	11	Right-handed alpha
Helix 6	AA6	D	12	38	Right-handed alpha
Helix 7	AA7	D	42	51	Right-handed alpha
Helix 8	AA8	E	13	46	Right-handed alpha
Helix 9	AA9	F	4	11	Right-handed alpha
Helix 10	AB1	F	12	38	Right-handed alpha
Helix 11	AB2	F	42	51	Right-handed alpha
Helix 12	AB3	G	13	46	Right-handed alpha
Helix 13	AB4	I	2	10	Right-handed 310
Helix 14	AB5	I	12	38	Right-handed alpha
Helix 15	AB6	I	42	51	Right-handed alpha
Helix 16	AB7	J	13	46	Right-handed alpha
Helix 17	AB8	K	3	5	Right-handed 310
Helix 18	AB9	K	6	11	Right-handed alpha
Helix 19	AC1	K	12	37	Right-handed alpha
Helix 20	AC2	K	42	52	Right-handed alpha
Helix 21	AC3	N	13	46	Right-handed alpha
Helix 22	AC4	O	2	10	Right-handed 310
Helix 23	AC5	O	12	38	Right-handed alpha
Helix 24	AC6	O	42	51	Right-handed alpha
Helix 25	AC7	P	13	46	Right-handed alpha
Helix 26	AC8	Q	3	10	Right-handed 310
Helix 27	AC9	Q	12	38	Right-handed alpha
Helix 28	AD1	Q	42	51	Right-handed alpha
Helix 29	AD2	R	13	46	Right-handed alpha
Helix 30	AD3	S	6	11	Right-handed alpha
Helix 31	AD4	S	12	38	Right-handed alpha
Helix 32	AD5	S	42	51	Right-handed alpha
Helix 33	AD6	T	13	46	Right-handed alpha
Helix 34	AD7	U	3	10	Right-handed 310
Helix 35	AD8	U	12	38	Right-handed alpha
Helix 36	AD9	U	42	51	Right-handed alpha
Helix 37	AE1	V	13	46	Right-handed alpha
Helix 38	AE2	W	3	5	Right-handed 310
Helix 39	AE3	W	6	11	Right-handed alpha
Helix 40	AE4	W	12	38	Right-handed alpha
Helix 41	AE5	W	42	52	Right-handed alpha
Helix 42	AE6	X	13	46	Right-handed alpha
Helix 43	AE7	Y	1	4	Right-handed 310
Helix 44	AE8	Y	5	11	Right-handed alpha
Helix 45	AE9	Y	12	38	Right-handed alpha
Helix 46	AF1	Y	42	51	Right-handed alpha
Helix 47	AF2	Z	13	46	Right-handed alpha
Helix 48	AF3	1	6	11	Right-handed alpha
Helix 49	AF4	1	12	38	Right-handed alpha
Helix 50	AF5	1	42	51	Right-handed alpha
Helix 51	AF6	2	13	46	Right-handed alpha
Helix 52	AF7	7	6	11	Right-handed alpha
Helix 53	AF8	7	12	38	Right-handed alpha
Helix 54	AF9	7	42	46	Right-handed 310
Helix 55	AG1	8	13	46	Right-handed alpha
Helix 56	AG2	9	1	4	Right-handed 310
Helix 57	AG3	9	5	11	Right-handed alpha
Helix 58	AG4	9	12	38	Right-handed alpha
Helix 59	AG5	9	42	52	Right-handed alpha
Helix 60	AG6	0	13	46	Right-handed alpha
Helix 61	AG7	4	5	11	Right-handed alpha
Helix 62	AG8	4	12	38	Right-handed alpha
Helix 63	AG9	4	42	52	Right-handed alpha
Helix 64	AH1	t	13	46	Right-handed alpha
Helix 65	AH2	6	5	11	Right-handed alpha
Helix 66	AH3	6	12	38	Right-handed alpha
Helix 67	AH4	6	42	52	Right-handed alpha
Helix 68	AH5	5	13	46	Right-handed alpha
Helix 69	AH6	C	3	5	Right-handed 310
Helix 70	AH7	C	6	11	Right-handed alpha
Helix 71	AH8	C	12	38	Right-handed alpha
Helix 72	AH9	C	39	41	Right-handed 310
Helix 73	AI1	C	42	51	Right-handed alpha
Helix 74	AI2	3	13	46	Right-handed alpha
Helix 75	AI3	L	6	10	Right-handed 310
Helix 76	AI4	L	32	57	Right-handed alpha
Helix 77	AI5	L	60	64	Right-handed 310
Helix 78	AI6	L	85	112	Right-handed alpha
Helix 79	AI7	L	115	130	Right-handed alpha
Helix 80	AI8	L	134	140	Right-handed alpha
Helix 81	AI9	L	141	145	Right-handed 310
Helix 82	AJ1	L	149	153	Right-handed 310
Helix 83	AJ2	L	161	165	Right-handed 310
Helix 84	AJ3	L	166	169	Right-handed 310
Helix 85	AJ4	L	170	199	Right-handed alpha
Helix 86	AJ5	L	208	221	Right-handed alpha
Helix 87	AJ6	L	225	250	Right-handed alpha
Helix 88	AJ7	L	259	268	Right-handed alpha
Helix 89	AJ8	M	38	43	Right-handed alpha
Helix 90	AJ9	M	53	79	Right-handed alpha
Helix 91	AK1	M	81	88	Right-handed alpha
Helix 92	AK2	M	112	141	Right-handed alpha
Helix 93	AK3	M	144	162	Right-handed alpha
Helix 94	AK4	M	163	169	Right-handed alpha
Helix 95	AK5	M	180	193	Right-handed alpha
Helix 96	AK6	M	199	226	Right-handed alpha
Helix 97	AK7	M	234	238	Right-handed 310
Helix 98	AK8	M	242	257	Right-handed alpha
Helix 99	AK9	M	261	290	Right-handed alpha
Helix 100	AL1	M	293	298	Right-handed alpha
Helix 101	AL2	M	299	302	Right-handed 310
Helix 102	AL3	H	11	35	Right-handed alpha
Helix 103	AL4	H	103	108	Right-handed alpha
Helix 104	AL5	H	109	113	Right-handed 310
Helix 105	AL6	H	209	214	Right-handed alpha
Helix 106	AL7	H	226	244	Right-handed alpha

There are 6 sheets in PDB entry 7VOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	26	first strand
Strand 2	L	29	30	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	93	94	first strand
Strand 2	M	177	178	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	65	first strand
Strand 2	H	72	74	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	87	89	first strand
Strand 2	H	98	100	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	160	170	anti-parallel
Strand 3	H	175	182	anti-parallel
Strand 4	H	188	192	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	131	133	first strand
Strand 2	H	160	170	anti-parallel
Strand 3	H	152	154	anti-parallel
Strand 4	H	203	204	parallel
Strand 5	H	197	198	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VOY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VOY