Analysis of interatomic Contacts of Structural Units in PDB entry:
7VPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VPA entry

There are 2 chains in PDB entry 7VPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 17LEU 290
B
 ASP 20LEU 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 7VPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 36Right-handed alpha
Helix 2
AA2
A
82 87Right-handed 310
Helix 3
AA3
A
88 95Right-handed alpha
Helix 4
AA4
A
111 131Right-handed alpha
Helix 5
AA5
A
152 162Right-handed alpha
Helix 6
AA6
A
180 186Right-handed 310
Helix 7
AA7
A
202 205Right-handed 310
Helix 8
AA8
A
206 214Right-handed alpha
Helix 9
AA9
A
243 260Right-handed alpha
Helix 10
AB1
A
262 269Right-handed 310
Helix 11
AB2
A
273 277Right-handed 310
Helix 12
AB3
B
30 36Right-handed alpha
Helix 13
AB4
B
82 87Right-handed 310
Helix 14
AB5
B
88 95Right-handed alpha
Helix 15
AB6
B
111 130Right-handed alpha
Helix 16
AB7
B
152 162Right-handed alpha
Helix 17
AB8
B
180 186Right-handed 310
Helix 18
AB9
B
202 205Right-handed 310
Helix 19
AC1
B
206 214Right-handed alpha
Helix 20
AC2
B
243 259Right-handed alpha
Helix 21
AC3
B
262 269Right-handed 310
Helix 22
AC4
B
273 277Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 7VPA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
58 63anti-parallel
Strand 3
A
99 103anti-parallel
Strand 4
A
70 76parallel
Strand 5
A
141 151parallel
Strand 6
A
169 173parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 195first strand
Strand 2
A
220 225parallel
Strand 3
A
280 285anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 48first strand
Strand 2
B
58 63anti-parallel
Strand 3
B
99 103anti-parallel
Strand 4
B
70 76parallel
Strand 5
B
141 151parallel
Strand 6
B
169 173parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 195first strand
Strand 2
B
220 225parallel
Strand 3
B
280 285anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il