Analysis of interatomic Contacts of Structural Units in PDB entry:
7VPB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VPB entry

There are 2 chains in PDB entry 7VPB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 20TYR 289
B
 ASP 20TYR 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7VPB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 36Right-handed alpha
Helix 2
AA2
A
82 87Right-handed 310
Helix 3
AA3
A
88 95Right-handed alpha
Helix 4
AA4
A
111 131Right-handed alpha
Helix 5
AA5
A
152 163Right-handed alpha
Helix 6
AA6
A
180 186Right-handed 310
Helix 7
AA7
A
206 214Right-handed alpha
Helix 8
AA8
A
240 242Right-handed 310
Helix 9
AA9
A
243 260Right-handed alpha
Helix 10
AB1
A
262 264Right-handed 310
Helix 11
AB2
A
265 270Right-handed alpha
Helix 12
AB3
A
273 277Right-handed 310
Helix 13
AB4
B
30 36Right-handed alpha
Helix 14
AB5
B
82 87Right-handed 310
Helix 15
AB6
B
88 95Right-handed alpha
Helix 16
AB7
B
111 131Right-handed alpha
Helix 17
AB8
B
152 163Right-handed alpha
Helix 18
AB9
B
180 186Right-handed 310
Helix 19
AC1
B
206 214Right-handed alpha
Helix 20
AC2
B
240 242Right-handed 310
Helix 21
AC3
B
243 260Right-handed alpha
Helix 22
AC4
B
262 264Right-handed 310
Helix 23
AC5
B
265 270Right-handed alpha
Helix 24
AC6
B
273 277Right-handed 310
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There are 4 sheets in PDB entry 7VPB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 48first strand
Strand 2
A
58 63anti-parallel
Strand 3
A
99 103anti-parallel
Strand 4
A
70 76parallel
Strand 5
A
141 151parallel
Strand 6
A
169 173parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 195first strand
Strand 2
A
220 225parallel
Strand 3
A
280 285anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 48first strand
Strand 2
B
58 63anti-parallel
Strand 3
B
99 103anti-parallel
Strand 4
B
70 76parallel
Strand 5
B
141 151parallel
Strand 6
B
169 173parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 195first strand
Strand 2
B
220 225parallel
Strand 3
B
280 285anti-parallel
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