Analysis of interatomic Contacts of Structural Units in PDB entry:
7VPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VPF entry

There are 2 chains in PDB entry 7VPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 273
B
 MET 1VAL 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 7VPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 18Right-handed 310
Helix 2
AA2
A
21 32Right-handed alpha
Helix 3
AA3
A
41 48Right-handed alpha
Helix 4
AA4
A
48 59Right-handed alpha
Helix 5
AA5
A
76 97Right-handed alpha
Helix 6
AA6
A
113 135Right-handed alpha
Helix 7
AA7
A
145 149Right-handed 310
Helix 8
AA8
A
157 167Right-handed alpha
Helix 9
AA9
A
179 183Right-handed alpha
Helix 10
AB1
A
187 195Right-handed alpha
Helix 11
AB2
A
227 238Right-handed alpha
Helix 12
AB3
A
250 255Right-handed alpha
Helix 13
AB4
A
257 272Right-handed alpha
Helix 14
AB5
B
15 18Right-handed 310
Helix 15
AB6
B
21 32Right-handed alpha
Helix 16
AB7
B
41 48Right-handed alpha
Helix 17
AB8
B
48 58Right-handed alpha
Helix 18
AB9
B
76 97Right-handed alpha
Helix 19
AC1
B
113 135Right-handed alpha
Helix 20
AC2
B
145 149Right-handed 310
Helix 21
AC3
B
157 166Right-handed alpha
Helix 22
AC4
B
179 183Right-handed alpha
Helix 23
AC5
B
187 195Right-handed alpha
Helix 24
AC6
B
227 238Right-handed alpha
Helix 25
AC7
B
250 255Right-handed alpha
Helix 26
AC8
B
257 272Right-handed alpha
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There are 4 sheets in PDB entry 7VPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
36 40parallel
Strand 3
A
62 70parallel
Strand 4
A
101 105parallel
Strand 5
A
138 141parallel
Strand 6
A
173 178parallel
Strand 7
A
199 204parallel
Strand 8
A
244 246parallel
Strand 9
A
10 13parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
218 219anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
36 40parallel
Strand 3
B
62 70parallel
Strand 4
B
101 105parallel
Strand 5
B
138 141parallel
Strand 6
B
173 178parallel
Strand 7
B
199 204parallel
Strand 8
B
244 246parallel
Strand 9
B
10 13parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
218 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il