Analysis of interatomic Contacts of Structural Units in PDB entry:
7VPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VPI entry

There is 1 chain in PDB entry 7VPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 180PRO 1173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 7VPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
184 189Right-handed alpha
Helix 2
AA2
A
193 201Right-handed alpha
Helix 3
AA3
A
206 217Right-handed alpha
Helix 4
AA4
A
228 237Right-handed alpha
Helix 5
AA5
A
238 255Right-handed alpha
Helix 6
AA6
A
256 290Right-handed alpha
Helix 7
AA7
A
343 347Right-handed alpha
Helix 8
AA8
A
365 370Right-handed alpha
Helix 9
AA9
A
403 412Right-handed alpha
Helix 10
AB1
A
421 451Right-handed alpha
Helix 11
AB2
A
453 469Right-handed alpha
Helix 12
AB3
A
472 492Right-handed alpha
Helix 13
AB4
A
499 506Right-handed alpha
Helix 14
AB5
A
549 558Right-handed alpha
Helix 15
AB6
A
571 582Right-handed alpha
Helix 16
AB7
A
656 664Right-handed alpha
Helix 17
AB8
A
672 684Right-handed alpha
Helix 18
AB9
A
701 706Right-handed alpha
Helix 19
AC1
A
708 713Right-handed alpha
Helix 20
AC2
A
731 742Right-handed alpha
Helix 21
AC3
A
753 765Right-handed alpha
Helix 22
AC4
A
826 837Right-handed alpha
Helix 23
AC5
A
840 846Right-handed alpha
Helix 24
AC6
A
855 869Right-handed alpha
Helix 25
AC7
A
879 881Right-handed 310
Helix 26
AC8
A
882 889Right-handed alpha
Helix 27
AC9
A
914 954Right-handed alpha
Helix 28
AD1
A
960 969Right-handed alpha
Helix 29
AD2
A
969 978Right-handed alpha
Helix 30
AD3
A
979 981Right-handed 310
Helix 31
AD4
A
998 1026Right-handed alpha
Helix 32
AD5
A
1044 1067Right-handed alpha
Helix 33
AD6
A
1074 1078Right-handed 310
Helix 34
AD7
A
1079 1098Right-handed alpha
Helix 35
AD8
A
1099 1101Right-handed 310
Helix 36
AD9
A
1102 1107Right-handed alpha
Helix 37
AE1
A
1113 1150Right-handed alpha
Helix 38
AE2
A
1157 1169Right-handed alpha
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There are 8 sheets in PDB entry 7VPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 297first strand
Strand 2
A
304 308anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
392 395anti-parallel
Strand 3
A
331 335anti-parallel
Strand 4
A
373 374anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 327first strand
Strand 2
A
378 384anti-parallel
Strand 3
A
337 342anti-parallel
Strand 4
A
348 354anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 512first strand
Strand 2
A
745 749parallel
Strand 3
A
850 851parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 530first strand
Strand 2
A
717 725anti-parallel
Strand 3
A
687 694anti-parallel
Strand 4
A
650 655anti-parallel
Strand 5
A
636 642anti-parallel
Strand 6
A
622 628anti-parallel
Strand 7
A
600 604anti-parallel
Strand 8
A
584 585anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 564first strand
Strand 2
A
567 569anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
788 794first strand
Strand 2
A
773 779anti-parallel
Strand 3
A
822 825parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
874 875first strand
Strand 2
A
891 892parallel
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