Analysis of interatomic Contacts of Structural Units in PDB entry:
7VPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VPL entry

There is 1 chain in PDB entry 7VPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 34PRO 1173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 7VPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 55Right-handed alpha
Helix 2
AA2
A
59 65Right-handed alpha
Helix 3
AA3
A
69 77Right-handed alpha
Helix 4
AA4
A
168 171Right-handed 310
Helix 5
AA5
A
193 200Right-handed alpha
Helix 6
AA6
A
205 217Right-handed alpha
Helix 7
AA7
A
227 237Right-handed alpha
Helix 8
AA8
A
238 254Right-handed alpha
Helix 9
AA9
A
256 290Right-handed alpha
Helix 10
AB1
A
342 347Right-handed alpha
Helix 11
AB2
A
365 370Right-handed alpha
Helix 12
AB3
A
398 401Right-handed 310
Helix 13
AB4
A
402 412Right-handed alpha
Helix 14
AB5
A
419 450Right-handed alpha
Helix 15
AB6
A
453 469Right-handed alpha
Helix 16
AB7
A
472 491Right-handed alpha
Helix 17
AB8
A
497 499Right-handed 310
Helix 18
AB9
A
500 506Right-handed alpha
Helix 19
AC1
A
549 558Right-handed alpha
Helix 20
AC2
A
571 582Right-handed alpha
Helix 21
AC3
A
656 664Right-handed alpha
Helix 22
AC4
A
672 683Right-handed alpha
Helix 23
AC5
A
701 706Right-handed alpha
Helix 24
AC6
A
708 714Right-handed alpha
Helix 25
AC7
A
731 742Right-handed alpha
Helix 26
AC8
A
753 765Right-handed alpha
Helix 27
AC9
A
827 837Right-handed alpha
Helix 28
AD1
A
840 846Right-handed alpha
Helix 29
AD2
A
855 869Right-handed alpha
Helix 30
AD3
A
882 889Right-handed alpha
Helix 31
AD4
A
899 904Right-handed alpha
Helix 32
AD5
A
914 954Right-handed alpha
Helix 33
AD6
A
961 968Right-handed alpha
Helix 34
AD7
A
968 978Right-handed alpha
Helix 35
AD8
A
998 1026Right-handed alpha
Helix 36
AD9
A
1044 1066Right-handed alpha
Helix 37
AE1
A
1074 1077Right-handed 310
Helix 38
AE2
A
1078 1098Right-handed alpha
Helix 39
AE3
A
1102 1107Right-handed alpha
Helix 40
AE4
A
1113 1150Right-handed alpha
Helix 41
AE5
A
1157 1169Right-handed alpha
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There are 6 sheets in PDB entry 7VPL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
101 111anti-parallel
Strand 5
A
162 166anti-parallel
Strand 6
A
173 176anti-parallel
Strand 7
A
181 184anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
392 397anti-parallel
Strand 3
A
330 335anti-parallel
Strand 4
A
373 374anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
379 384anti-parallel
Strand 3
A
337 341anti-parallel
Strand 4
A
352 355anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 495first strand
Strand 2
A
906 908anti-parallel
Strand 3
A
891 894parallel
Strand 4
A
873 877parallel
Strand 5
A
509 512parallel
Strand 6
A
745 749parallel
Strand 7
A
848 852parallel
Strand 8
A
822 826parallel
Strand 9
A
773 779parallel
Strand 10
A
788 794anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 529first strand
Strand 2
A
717 725anti-parallel
Strand 3
A
686 694anti-parallel
Strand 4
A
650 655anti-parallel
Strand 5
A
636 642anti-parallel
Strand 6
A
622 631anti-parallel
Strand 7
A
600 604anti-parallel
Strand 8
A
584 586anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 564first strand
Strand 2
A
567 569anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il