Analysis of interatomic Contacts of Structural Units in PDB entry:
7VPP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VPP entry

There are 3 chains in PDB entry 7VPP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 58	HIS 965
B	LEU 305	THR 407
C	LEU 61	HIS 963

There are 85 helices in PDB entry 7VPP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	69	Right-handed 310
Helix 2	AA2	A	211	215	Right-handed 310
Helix 3	AA3	A	271	275	Right-handed 310
Helix 4	AA4	A	300	306	Right-handed alpha
Helix 5	AA5	A	309	327	Right-handed alpha
Helix 6	AA6	A	359	363	Right-handed alpha
Helix 7	AA7	A	370	387	Right-handed alpha
Helix 8	AA8	A	398	401	Right-handed 310
Helix 9	AA9	A	402	421	Right-handed alpha
Helix 10	AB1	A	422	428	Right-handed 310
Helix 11	AB2	A	429	434	Right-handed alpha
Helix 12	AB3	A	434	443	Right-handed alpha
Helix 13	AB4	A	453	457	Right-handed 310
Helix 14	AB5	A	459	466	Right-handed alpha
Helix 15	AB6	A	468	486	Right-handed alpha
Helix 16	AB7	A	487	502	Right-handed alpha
Helix 17	AB8	A	508	521	Right-handed alpha
Helix 18	AB9	A	531	541	Right-handed alpha
Helix 19	AC1	A	607	610	Right-handed 310
Helix 20	AC2	A	621	624	Right-handed 310
Helix 21	AC3	A	632	646	Right-handed alpha
Helix 22	AC4	A	651	668	Right-handed alpha
Helix 23	AC5	A	672	678	Right-handed alpha
Helix 24	AC6	A	679	686	Right-handed 310
Helix 25	AC7	A	688	707	Right-handed alpha
Helix 26	AC8	A	711	734	Right-handed alpha
Helix 27	AC9	A	743	760	Right-handed alpha
Helix 28	AD1	A	762	779	Right-handed alpha
Helix 29	AD2	A	786	788	Right-handed 310
Helix 30	AD3	A	789	801	Right-handed alpha
Helix 31	AD4	A	802	815	Right-handed alpha
Helix 32	AD5	A	818	829	Right-handed alpha
Helix 33	AD6	A	830	832	Right-handed 310
Helix 34	AD7	A	834	845	Right-handed alpha
Helix 35	AD8	A	852	854	Right-handed 310
Helix 36	AD9	A	855	866	Right-handed alpha
Helix 37	AE1	A	868	879	Right-handed alpha
Helix 38	AE2	A	880	885	Right-handed alpha
Helix 39	AE3	A	895	904	Right-handed alpha
Helix 40	AE4	A	908	922	Right-handed alpha
Helix 41	AE5	A	927	929	Right-handed 310
Helix 42	AE6	A	930	961	Right-handed alpha
Helix 43	AE7	C	65	69	Right-handed 310
Helix 44	AE8	C	211	215	Right-handed 310
Helix 45	AE9	C	271	275	Right-handed 310
Helix 46	AF1	C	300	306	Right-handed alpha
Helix 47	AF2	C	309	327	Right-handed alpha
Helix 48	AF3	C	360	362	Right-handed 310
Helix 49	AF4	C	370	388	Right-handed alpha
Helix 50	AF5	C	398	401	Right-handed 310
Helix 51	AF6	C	402	421	Right-handed alpha
Helix 52	AF7	C	422	428	Right-handed 310
Helix 53	AF8	C	429	434	Right-handed alpha
Helix 54	AF9	C	434	443	Right-handed alpha
Helix 55	AG1	C	453	457	Right-handed 310
Helix 56	AG2	C	459	466	Right-handed alpha
Helix 57	AG3	C	468	487	Right-handed alpha
Helix 58	AG4	C	487	502	Right-handed alpha
Helix 59	AG5	C	508	522	Right-handed alpha
Helix 60	AG6	C	531	541	Right-handed alpha
Helix 61	AG7	C	607	610	Right-handed 310
Helix 62	AG8	C	621	624	Right-handed 310
Helix 63	AG9	C	632	644	Right-handed alpha
Helix 64	AH1	C	646	650	Right-handed 310
Helix 65	AH2	C	651	668	Right-handed alpha
Helix 66	AH3	C	672	678	Right-handed alpha
Helix 67	AH4	C	679	686	Right-handed 310
Helix 68	AH5	C	688	707	Right-handed alpha
Helix 69	AH6	C	711	734	Right-handed alpha
Helix 70	AH7	C	743	760	Right-handed alpha
Helix 71	AH8	C	762	779	Right-handed alpha
Helix 72	AH9	C	786	788	Right-handed 310
Helix 73	AI1	C	789	801	Right-handed alpha
Helix 74	AI2	C	802	814	Right-handed alpha
Helix 75	AI3	C	818	829	Right-handed alpha
Helix 76	AI4	C	830	832	Right-handed 310
Helix 77	AI5	C	834	845	Right-handed alpha
Helix 78	AI6	C	852	854	Right-handed 310
Helix 79	AI7	C	855	866	Right-handed alpha
Helix 80	AI8	C	868	880	Right-handed alpha
Helix 81	AI9	C	880	886	Right-handed alpha
Helix 82	AJ1	C	895	904	Right-handed alpha
Helix 83	AJ2	C	908	921	Right-handed alpha
Helix 84	AJ3	C	927	929	Right-handed 310
Helix 85	AJ4	C	930	961	Right-handed alpha

There are 22 sheets in PDB entry 7VPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	170	180	anti-parallel
Strand 3	A	133	136	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	125	first strand
Strand 2	A	170	180	anti-parallel
Strand 3	A	98	109	anti-parallel
Strand 4	A	76	87	anti-parallel
Strand 5	A	227	235	parallel
Strand 6	A	259	263	anti-parallel
Strand 7	A	251	252	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	119	first strand
Strand 2	A	156	161	anti-parallel
Strand 3	A	145	151	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	195	first strand
Strand 2	A	198	206	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	242	first strand
Strand 2	A	277	280	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	288	first strand
Strand 2	A	294	299	anti-parallel
Strand 3	A	335	341	parallel
Strand 4	A	354	358	parallel
Strand 5	A	348	349	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	396	first strand
Strand 2	A	505	507	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	603	605	first strand
Strand 2	A	556	561	anti-parallel
Strand 3	A	546	550	anti-parallel
Strand 4	A	628	631	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	582	584	first strand
Strand 2	A	596	598	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	586	588	anti-parallel
Strand 3	A	617	619	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	740	first strand
Strand 2	B	397	399	parallel
Strand 3	B	388	393	anti-parallel
Strand 4	B	353	358	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	328	first strand
Strand 2	B	308	316	anti-parallel
Strand 3	B	343	350	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	125	first strand
Strand 2	C	170	180	anti-parallel
Strand 3	C	133	136	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	125	first strand
Strand 2	C	170	180	anti-parallel
Strand 3	C	98	109	anti-parallel
Strand 4	C	76	87	anti-parallel
Strand 5	C	227	235	parallel
Strand 6	C	256	263	anti-parallel
Strand 7	C	251	253	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	119	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	145	151	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	195	first strand
Strand 2	C	198	206	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	242	first strand
Strand 2	C	277	280	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	288	first strand
Strand 2	C	294	299	anti-parallel
Strand 3	C	335	341	parallel
Strand 4	C	354	358	parallel
Strand 5	C	348	349	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	505	507	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	603	605	first strand
Strand 2	C	556	561	anti-parallel
Strand 3	C	546	551	anti-parallel
Strand 4	C	628	631	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	582	584	first strand
Strand 2	C	596	598	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	591	592	first strand
Strand 2	C	586	588	anti-parallel
Strand 3	C	617	619	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VPP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VPP