Analysis of interatomic Contacts of Structural Units in PDB entry:
7VPQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VPQ entry

There are 6 chains in PDB entry 7VPQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 66	THR 963
B	LEU 305	THR 407
C	ASP 66	THR 963
D	LEU 305	THR 407
E	ASP 66	THR 963
F	LEU 305	THR 407

There are120 helices in PDB entry 7VPQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	73	Right-handed 310
Helix 2	AA2	A	216	220	Right-handed 310
Helix 3	AA3	A	276	280	Right-handed 310
Helix 4	AA4	A	305	311	Right-handed alpha
Helix 5	AA5	A	314	332	Right-handed alpha
Helix 6	AA6	A	365	367	Right-handed 310
Helix 7	AA7	A	375	393	Right-handed alpha
Helix 8	AA8	A	403	406	Right-handed 310
Helix 9	AA9	A	407	426	Right-handed alpha
Helix 10	AB1	A	427	433	Right-handed 310
Helix 11	AB2	A	434	439	Right-handed alpha
Helix 12	AB3	A	439	448	Right-handed alpha
Helix 13	AB4	A	458	462	Right-handed 310
Helix 14	AB5	A	464	471	Right-handed alpha
Helix 15	AB6	A	473	492	Right-handed alpha
Helix 16	AB7	A	492	507	Right-handed alpha
Helix 17	AB8	A	513	528	Right-handed alpha
Helix 18	AB9	A	535	545	Right-handed alpha
Helix 19	AC1	A	610	613	Right-handed 310
Helix 20	AC2	A	635	641	Right-handed alpha
Helix 21	AC3	A	654	671	Right-handed alpha
Helix 22	AC4	A	675	682	Right-handed alpha
Helix 23	AC5	A	683	689	Right-handed 310
Helix 24	AC6	A	691	710	Right-handed alpha
Helix 25	AC7	A	714	737	Right-handed alpha
Helix 26	AC8	A	746	763	Right-handed alpha
Helix 27	AC9	A	765	781	Right-handed alpha
Helix 28	AD1	A	789	804	Right-handed alpha
Helix 29	AD2	A	805	818	Right-handed alpha
Helix 30	AD3	A	821	832	Right-handed alpha
Helix 31	AD4	A	833	835	Right-handed 310
Helix 32	AD5	A	837	849	Right-handed alpha
Helix 33	AD6	A	855	857	Right-handed 310
Helix 34	AD7	A	858	869	Right-handed alpha
Helix 35	AD8	A	869	891	Right-handed alpha
Helix 36	AD9	A	897	907	Right-handed alpha
Helix 37	AE1	A	911	925	Right-handed alpha
Helix 38	AE2	A	930	932	Right-handed 310
Helix 39	AE3	A	933	963	Right-handed alpha
Helix 40	AE4	C	69	73	Right-handed 310
Helix 41	AE5	C	216	220	Right-handed 310
Helix 42	AE6	C	276	280	Right-handed 310
Helix 43	AE7	C	305	311	Right-handed alpha
Helix 44	AE8	C	314	332	Right-handed alpha
Helix 45	AE9	C	365	367	Right-handed 310
Helix 46	AF1	C	375	393	Right-handed alpha
Helix 47	AF2	C	403	406	Right-handed 310
Helix 48	AF3	C	407	426	Right-handed alpha
Helix 49	AF4	C	427	433	Right-handed 310
Helix 50	AF5	C	434	439	Right-handed alpha
Helix 51	AF6	C	439	448	Right-handed alpha
Helix 52	AF7	C	458	462	Right-handed 310
Helix 53	AF8	C	464	471	Right-handed alpha
Helix 54	AF9	C	473	492	Right-handed alpha
Helix 55	AG1	C	492	507	Right-handed alpha
Helix 56	AG2	C	513	528	Right-handed alpha
Helix 57	AG3	C	535	545	Right-handed alpha
Helix 58	AG4	C	610	613	Right-handed 310
Helix 59	AG5	C	624	627	Right-handed 310
Helix 60	AG6	C	635	641	Right-handed alpha
Helix 61	AG7	C	654	671	Right-handed alpha
Helix 62	AG8	C	675	682	Right-handed alpha
Helix 63	AG9	C	683	689	Right-handed 310
Helix 64	AH1	C	691	710	Right-handed alpha
Helix 65	AH2	C	714	737	Right-handed alpha
Helix 66	AH3	C	746	763	Right-handed alpha
Helix 67	AH4	C	765	782	Right-handed alpha
Helix 68	AH5	C	789	804	Right-handed alpha
Helix 69	AH6	C	805	818	Right-handed alpha
Helix 70	AH7	C	821	832	Right-handed alpha
Helix 71	AH8	C	833	835	Right-handed 310
Helix 72	AH9	C	837	849	Right-handed alpha
Helix 73	AI1	C	855	857	Right-handed 310
Helix 74	AI2	C	858	869	Right-handed alpha
Helix 75	AI3	C	869	891	Right-handed alpha
Helix 76	AI4	C	899	907	Right-handed alpha
Helix 77	AI5	C	911	925	Right-handed alpha
Helix 78	AI6	C	930	932	Right-handed 310
Helix 79	AI7	C	933	963	Right-handed alpha
Helix 80	AI8	E	69	73	Right-handed 310
Helix 81	AI9	E	216	220	Right-handed 310
Helix 82	AJ1	E	276	280	Right-handed 310
Helix 83	AJ2	E	305	311	Right-handed alpha
Helix 84	AJ3	E	314	332	Right-handed alpha
Helix 85	AJ4	E	364	368	Right-handed alpha
Helix 86	AJ5	E	375	393	Right-handed alpha
Helix 87	AJ6	E	403	406	Right-handed 310
Helix 88	AJ7	E	407	426	Right-handed alpha
Helix 89	AJ8	E	430	433	Right-handed 310
Helix 90	AJ9	E	434	439	Right-handed alpha
Helix 91	AK1	E	439	448	Right-handed alpha
Helix 92	AK2	E	458	462	Right-handed 310
Helix 93	AK3	E	464	471	Right-handed alpha
Helix 94	AK4	E	473	492	Right-handed alpha
Helix 95	AK5	E	492	507	Right-handed alpha
Helix 96	AK6	E	513	529	Right-handed alpha
Helix 97	AK7	E	535	545	Right-handed alpha
Helix 98	AK8	E	610	613	Right-handed 310
Helix 99	AK9	E	624	627	Right-handed 310
Helix 100	AL1	E	635	642	Right-handed alpha
Helix 101	AL2	E	654	671	Right-handed alpha
Helix 102	AL3	E	675	682	Right-handed alpha
Helix 103	AL4	E	683	689	Right-handed 310
Helix 104	AL5	E	691	710	Right-handed alpha
Helix 105	AL6	E	714	737	Right-handed alpha
Helix 106	AL7	E	746	763	Right-handed alpha
Helix 107	AL8	E	765	782	Right-handed alpha
Helix 108	AL9	E	789	791	Right-handed 310
Helix 109	AM1	E	792	804	Right-handed alpha
Helix 110	AM2	E	805	818	Right-handed alpha
Helix 111	AM3	E	821	832	Right-handed alpha
Helix 112	AM4	E	833	835	Right-handed 310
Helix 113	AM5	E	837	849	Right-handed alpha
Helix 114	AM6	E	855	857	Right-handed 310
Helix 115	AM7	E	858	869	Right-handed alpha
Helix 116	AM8	E	869	891	Right-handed alpha
Helix 117	AM9	E	897	906	Right-handed alpha
Helix 118	AN1	E	911	925	Right-handed alpha
Helix 119	AN2	E	930	932	Right-handed 310
Helix 120	AN3	E	933	963	Right-handed alpha

There are 39 sheets in PDB entry 7VPQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	175	185	anti-parallel
Strand 3	A	137	141	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	175	185	anti-parallel
Strand 3	A	102	113	anti-parallel
Strand 4	A	80	91	anti-parallel
Strand 5	A	232	240	parallel
Strand 6	A	261	271	anti-parallel
Strand 7	A	256	258	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	123	first strand
Strand 2	A	161	166	anti-parallel
Strand 3	A	150	156	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	200	first strand
Strand 2	A	203	211	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	246	first strand
Strand 2	A	283	285	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	293	first strand
Strand 2	A	299	304	anti-parallel
Strand 3	A	340	346	parallel
Strand 4	A	359	363	parallel
Strand 5	A	353	354	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	510	512	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	606	608	first strand
Strand 2	A	560	565	anti-parallel
Strand 3	A	550	555	anti-parallel
Strand 4	A	631	634	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	586	588	first strand
Strand 2	A	600	602	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	596	first strand
Strand 2	A	590	592	anti-parallel
Strand 3	A	620	622	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	744	first strand
Strand 2	B	397	406	parallel
Strand 3	B	377	379	anti-parallel
Strand 4	B	333	335	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	742	744	first strand
Strand 2	B	397	406	parallel
Strand 3	B	387	393	anti-parallel
Strand 4	B	353	358	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	328	first strand
Strand 2	B	310	316	anti-parallel
Strand 3	B	345	350	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	175	185	anti-parallel
Strand 3	C	137	141	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	175	185	anti-parallel
Strand 3	C	102	113	anti-parallel
Strand 4	C	80	91	anti-parallel
Strand 5	C	232	240	parallel
Strand 6	C	264	268	anti-parallel
Strand 7	C	256	257	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	123	first strand
Strand 2	C	161	166	anti-parallel
Strand 3	C	150	156	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	200	first strand
Strand 2	C	203	211	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	244	246	first strand
Strand 2	C	283	285	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	293	first strand
Strand 2	C	299	304	anti-parallel
Strand 3	C	340	346	parallel
Strand 4	C	359	363	parallel
Strand 5	C	353	354	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	401	first strand
Strand 2	C	510	512	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	606	608	first strand
Strand 2	C	560	565	anti-parallel
Strand 3	C	550	555	anti-parallel
Strand 4	C	631	634	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	586	588	first strand
Strand 2	C	600	602	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	595	596	first strand
Strand 2	C	590	592	anti-parallel
Strand 3	C	620	622	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	743	744	first strand
Strand 2	D	397	406	parallel
Strand 3	D	387	393	anti-parallel
Strand 4	D	353	358	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	743	744	first strand
Strand 2	D	397	406	parallel
Strand 3	D	378	380	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	328	first strand
Strand 2	D	310	316	anti-parallel
Strand 3	D	345	350	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	129	first strand
Strand 2	E	175	185	anti-parallel
Strand 3	E	137	141	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	129	first strand
Strand 2	E	175	185	anti-parallel
Strand 3	E	102	113	anti-parallel
Strand 4	E	80	91	anti-parallel
Strand 5	E	232	240	parallel
Strand 6	E	261	268	anti-parallel
Strand 7	E	256	258	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	123	first strand
Strand 2	E	161	166	anti-parallel
Strand 3	E	150	156	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	192	200	first strand
Strand 2	E	203	211	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	244	246	first strand
Strand 2	E	283	285	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	288	293	first strand
Strand 2	E	299	304	anti-parallel
Strand 3	E	340	346	parallel
Strand 4	E	359	363	parallel
Strand 5	E	353	354	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	399	401	first strand
Strand 2	E	510	512	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	606	608	first strand
Strand 2	E	560	562	anti-parallel
Strand 3	E	551	555	anti-parallel
Strand 4	E	631	634	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	586	588	first strand
Strand 2	E	600	602	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	595	596	first strand
Strand 2	E	590	592	anti-parallel
Strand 3	E	620	622	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	742	744	first strand
Strand 2	F	397	406	parallel
Strand 3	F	387	393	anti-parallel
Strand 4	F	353	358	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	742	744	first strand
Strand 2	F	397	406	parallel
Strand 3	F	378	380	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	321	328	first strand
Strand 2	F	307	316	anti-parallel
Strand 3	F	342	350	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VPQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VPQ