Analysis of interatomic Contacts of Structural Units in PDB entry:
7VQ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VQ1 entry

There are 4 chains in PDB entry 7VQ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 56	TYR 1503
B	GLN 56	TYR 1503
C	GLN 56	TYR 1503
D	GLN 56	TYR 1503

There are212 helices in PDB entry 7VQ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	67	Right-handed alpha
Helix 2	AA2	A	114	118	Right-handed alpha
Helix 3	AA3	A	150	160	Right-handed alpha
Helix 4	AA4	A	183	201	Right-handed alpha
Helix 5	AA5	A	212	229	Right-handed alpha
Helix 6	AA6	A	249	254	Right-handed 310
Helix 7	AA7	A	298	310	Right-handed alpha
Helix 8	AA8	A	333	345	Right-handed alpha
Helix 9	AA9	A	357	367	Right-handed alpha
Helix 10	AB1	A	375	388	Right-handed alpha
Helix 11	AB2	A	395	412	Right-handed alpha
Helix 12	AB3	A	428	444	Right-handed alpha
Helix 13	AB4	A	449	462	Right-handed alpha
Helix 14	AB5	A	465	471	Right-handed alpha
Helix 15	AB6	A	480	483	Right-handed 310
Helix 16	AB7	A	484	494	Right-handed alpha
Helix 17	AB8	A	496	506	Right-handed alpha
Helix 18	AB9	A	509	514	Right-handed alpha
Helix 19	AC1	A	515	523	Right-handed alpha
Helix 20	AC2	A	530	542	Right-handed alpha
Helix 21	AC3	A	544	550	Right-handed alpha
Helix 22	AC4	A	557	570	Right-handed alpha
Helix 23	AC5	A	620	631	Right-handed alpha
Helix 24	AC6	A	634	643	Right-handed alpha
Helix 25	AC7	A	647	663	Right-handed alpha
Helix 26	AC8	A	668	697	Right-handed alpha
Helix 27	AC9	A	698	705	Right-handed alpha
Helix 28	AD1	A	716	725	Right-handed alpha
Helix 29	AD2	A	726	731	Right-handed alpha
Helix 30	AD3	A	733	744	Right-handed alpha
Helix 31	AD4	A	753	762	Right-handed alpha
Helix 32	AD5	A	762	768	Right-handed alpha
Helix 33	AD6	A	775	780	Right-handed alpha
Helix 34	AD7	A	783	794	Right-handed alpha
Helix 35	AD8	A	794	819	Right-handed alpha
Helix 36	AD9	A	826	846	Right-handed alpha
Helix 37	AE1	A	855	866	Right-handed alpha
Helix 38	AE2	A	866	888	Right-handed alpha
Helix 39	AE3	A	891	909	Right-handed alpha
Helix 40	AE4	A	910	916	Right-handed 310
Helix 41	AE5	A	920	956	Right-handed alpha
Helix 42	AE6	A	965	979	Right-handed alpha
Helix 43	AE7	A	1021	1037	Right-handed alpha
Helix 44	AE8	A	1038	1056	Right-handed alpha
Helix 45	AE9	A	1058	1077	Right-handed alpha
Helix 46	AF1	A	1084	1098	Right-handed alpha
Helix 47	AF2	A	1114	1141	Right-handed alpha
Helix 48	AF3	A	1143	1165	Right-handed alpha
Helix 49	AF4	A	1288	1292	Right-handed 310
Helix 50	AF5	A	1398	1403	Right-handed alpha
Helix 51	AF6	A	1410	1419	Right-handed alpha
Helix 52	AF7	A	1454	1463	Right-handed alpha
Helix 53	AF8	A	1485	1498	Right-handed alpha
Helix 54	AF9	B	57	67	Right-handed alpha
Helix 55	AG1	B	114	118	Right-handed alpha
Helix 56	AG2	B	150	160	Right-handed alpha
Helix 57	AG3	B	183	201	Right-handed alpha
Helix 58	AG4	B	212	229	Right-handed alpha
Helix 59	AG5	B	249	254	Right-handed 310
Helix 60	AG6	B	298	310	Right-handed alpha
Helix 61	AG7	B	333	345	Right-handed alpha
Helix 62	AG8	B	357	367	Right-handed alpha
Helix 63	AG9	B	375	388	Right-handed alpha
Helix 64	AH1	B	395	412	Right-handed alpha
Helix 65	AH2	B	428	444	Right-handed alpha
Helix 66	AH3	B	449	462	Right-handed alpha
Helix 67	AH4	B	465	471	Right-handed alpha
Helix 68	AH5	B	480	483	Right-handed 310
Helix 69	AH6	B	484	494	Right-handed alpha
Helix 70	AH7	B	496	506	Right-handed alpha
Helix 71	AH8	B	509	514	Right-handed alpha
Helix 72	AH9	B	515	523	Right-handed alpha
Helix 73	AI1	B	530	542	Right-handed alpha
Helix 74	AI2	B	544	550	Right-handed alpha
Helix 75	AI3	B	557	570	Right-handed alpha
Helix 76	AI4	B	620	631	Right-handed alpha
Helix 77	AI5	B	634	643	Right-handed alpha
Helix 78	AI6	B	647	663	Right-handed alpha
Helix 79	AI7	B	668	697	Right-handed alpha
Helix 80	AI8	B	698	705	Right-handed alpha
Helix 81	AI9	B	716	725	Right-handed alpha
Helix 82	AJ1	B	726	731	Right-handed alpha
Helix 83	AJ2	B	733	744	Right-handed alpha
Helix 84	AJ3	B	753	762	Right-handed alpha
Helix 85	AJ4	B	762	768	Right-handed alpha
Helix 86	AJ5	B	775	780	Right-handed alpha
Helix 87	AJ6	B	783	794	Right-handed alpha
Helix 88	AJ7	B	794	819	Right-handed alpha
Helix 89	AJ8	B	826	846	Right-handed alpha
Helix 90	AJ9	B	855	866	Right-handed alpha
Helix 91	AK1	B	866	888	Right-handed alpha
Helix 92	AK2	B	891	909	Right-handed alpha
Helix 93	AK3	B	910	916	Right-handed 310
Helix 94	AK4	B	920	956	Right-handed alpha
Helix 95	AK5	B	965	979	Right-handed alpha
Helix 96	AK6	B	1021	1037	Right-handed alpha
Helix 97	AK7	B	1038	1056	Right-handed alpha
Helix 98	AK8	B	1058	1077	Right-handed alpha
Helix 99	AK9	B	1084	1098	Right-handed alpha
Helix 100	AL1	B	1114	1141	Right-handed alpha
Helix 101	AL2	B	1143	1165	Right-handed alpha
Helix 102	AL3	B	1288	1292	Right-handed 310
Helix 103	AL4	B	1398	1403	Right-handed alpha
Helix 104	AL5	B	1410	1419	Right-handed alpha
Helix 105	AL6	B	1454	1463	Right-handed alpha
Helix 106	AL7	B	1485	1498	Right-handed alpha
Helix 107	AL8	C	57	67	Right-handed alpha
Helix 108	AL9	C	114	118	Right-handed alpha
Helix 109	AM1	C	150	160	Right-handed alpha
Helix 110	AM2	C	183	201	Right-handed alpha
Helix 111	AM3	C	212	229	Right-handed alpha
Helix 112	AM4	C	249	254	Right-handed 310
Helix 113	AM5	C	298	310	Right-handed alpha
Helix 114	AM6	C	333	345	Right-handed alpha
Helix 115	AM7	C	357	367	Right-handed alpha
Helix 116	AM8	C	375	388	Right-handed alpha
Helix 117	AM9	C	395	412	Right-handed alpha
Helix 118	AN1	C	428	444	Right-handed alpha
Helix 119	AN2	C	449	462	Right-handed alpha
Helix 120	AN3	C	465	471	Right-handed alpha
Helix 121	AN4	C	480	483	Right-handed 310
Helix 122	AN5	C	484	494	Right-handed alpha
Helix 123	AN6	C	496	506	Right-handed alpha
Helix 124	AN7	C	509	514	Right-handed alpha
Helix 125	AN8	C	515	523	Right-handed alpha
Helix 126	AN9	C	530	542	Right-handed alpha
Helix 127	AO1	C	544	550	Right-handed alpha
Helix 128	AO2	C	557	570	Right-handed alpha
Helix 129	AO3	C	620	631	Right-handed alpha
Helix 130	AO4	C	634	643	Right-handed alpha
Helix 131	AO5	C	647	663	Right-handed alpha
Helix 132	AO6	C	668	697	Right-handed alpha
Helix 133	AO7	C	698	705	Right-handed alpha
Helix 134	AO8	C	716	725	Right-handed alpha
Helix 135	AO9	C	726	731	Right-handed alpha
Helix 136	AP1	C	733	744	Right-handed alpha
Helix 137	AP2	C	753	762	Right-handed alpha
Helix 138	AP3	C	762	768	Right-handed alpha
Helix 139	AP4	C	775	780	Right-handed alpha
Helix 140	AP5	C	783	794	Right-handed alpha
Helix 141	AP6	C	794	819	Right-handed alpha
Helix 142	AP7	C	826	846	Right-handed alpha
Helix 143	AP8	C	855	866	Right-handed alpha
Helix 144	AP9	C	866	888	Right-handed alpha
Helix 145	AQ1	C	891	909	Right-handed alpha
Helix 146	AQ2	C	910	916	Right-handed 310
Helix 147	AQ3	C	920	956	Right-handed alpha
Helix 148	AQ4	C	965	979	Right-handed alpha
Helix 149	AQ5	C	1021	1037	Right-handed alpha
Helix 150	AQ6	C	1038	1056	Right-handed alpha
Helix 151	AQ7	C	1058	1077	Right-handed alpha
Helix 152	AQ8	C	1084	1098	Right-handed alpha
Helix 153	AQ9	C	1114	1141	Right-handed alpha
Helix 154	AR1	C	1143	1165	Right-handed alpha
Helix 155	AR2	C	1288	1292	Right-handed 310
Helix 156	AR3	C	1398	1403	Right-handed alpha
Helix 157	AR4	C	1410	1419	Right-handed alpha
Helix 158	AR5	C	1454	1463	Right-handed alpha
Helix 159	AR6	C	1485	1498	Right-handed alpha
Helix 160	AR7	D	57	67	Right-handed alpha
Helix 161	AR8	D	114	118	Right-handed alpha
Helix 162	AR9	D	150	160	Right-handed alpha
Helix 163	AS1	D	183	201	Right-handed alpha
Helix 164	AS2	D	212	229	Right-handed alpha
Helix 165	AS3	D	249	254	Right-handed 310
Helix 166	AS4	D	298	310	Right-handed alpha
Helix 167	AS5	D	333	345	Right-handed alpha
Helix 168	AS6	D	357	367	Right-handed alpha
Helix 169	AS7	D	375	388	Right-handed alpha
Helix 170	AS8	D	395	412	Right-handed alpha
Helix 171	AS9	D	428	444	Right-handed alpha
Helix 172	AT1	D	449	462	Right-handed alpha
Helix 173	AT2	D	465	471	Right-handed alpha
Helix 174	AT3	D	480	483	Right-handed 310
Helix 175	AT4	D	484	494	Right-handed alpha
Helix 176	AT5	D	496	506	Right-handed alpha
Helix 177	AT6	D	509	514	Right-handed alpha
Helix 178	AT7	D	515	523	Right-handed alpha
Helix 179	AT8	D	530	543	Right-handed alpha
Helix 180	AT9	D	544	550	Right-handed alpha
Helix 181	AU1	D	557	570	Right-handed alpha
Helix 182	AU2	D	620	631	Right-handed alpha
Helix 183	AU3	D	634	643	Right-handed alpha
Helix 184	AU4	D	647	663	Right-handed alpha
Helix 185	AU5	D	668	697	Right-handed alpha
Helix 186	AU6	D	698	705	Right-handed alpha
Helix 187	AU7	D	716	725	Right-handed alpha
Helix 188	AU8	D	726	731	Right-handed alpha
Helix 189	AU9	D	733	744	Right-handed alpha
Helix 190	AV1	D	753	762	Right-handed alpha
Helix 191	AV2	D	762	768	Right-handed alpha
Helix 192	AV3	D	775	780	Right-handed alpha
Helix 193	AV4	D	783	794	Right-handed alpha
Helix 194	AV5	D	794	819	Right-handed alpha
Helix 195	AV6	D	826	846	Right-handed alpha
Helix 196	AV7	D	855	866	Right-handed alpha
Helix 197	AV8	D	866	888	Right-handed alpha
Helix 198	AV9	D	891	909	Right-handed alpha
Helix 199	AW1	D	910	916	Right-handed 310
Helix 200	AW2	D	920	956	Right-handed alpha
Helix 201	AW3	D	965	979	Right-handed alpha
Helix 202	AW4	D	1021	1037	Right-handed alpha
Helix 203	AW5	D	1038	1056	Right-handed alpha
Helix 204	AW6	D	1058	1077	Right-handed alpha
Helix 205	AW7	D	1084	1098	Right-handed alpha
Helix 206	AW8	D	1114	1141	Right-handed alpha
Helix 207	AW9	D	1143	1165	Right-handed alpha
Helix 208	AX1	D	1288	1292	Right-handed 310
Helix 209	AX2	D	1398	1403	Right-handed alpha
Helix 210	AX3	D	1410	1419	Right-handed alpha
Helix 211	AX4	D	1454	1463	Right-handed alpha
Helix 212	AX5	D	1485	1498	Right-handed alpha

There are 34 sheets in PDB entry 7VQ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	68	72	first strand
Strand 2	A	119	123	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	172	first strand
Strand 2	A	204	207	parallel
Strand 3	A	239	243	parallel
Strand 4	A	283	288	parallel
Strand 5	A	140	146	parallel
Strand 6	A	127	132	anti-parallel
Strand 7	A	263	264	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	316	first strand
Strand 2	A	319	322	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	329	first strand
Strand 2	A	350	352	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1275	1277	first strand
Strand 2	A	1334	1337	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1303	1305	first strand
Strand 2	A	1308	1310	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1347	1348	first strand
Strand 2	A	1390	1391	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1422	1423	first strand
Strand 2	A	1445	1449	anti-parallel
Strand 3	A	1352	1355	parallel
Strand 4	A	1372	1378	anti-parallel
Strand 5	A	1472	1477	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1427	1428	first strand
Strand 2	A	1441	1442	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	72	first strand
Strand 2	B	119	123	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	172	first strand
Strand 2	B	204	207	parallel
Strand 3	B	239	243	parallel
Strand 4	B	283	288	parallel
Strand 5	B	140	146	parallel
Strand 6	B	127	132	anti-parallel
Strand 7	B	263	264	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	316	first strand
Strand 2	B	319	322	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	327	329	first strand
Strand 2	B	350	352	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1275	1277	first strand
Strand 2	B	1334	1337	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1303	1305	first strand
Strand 2	B	1308	1310	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1390	1391	first strand
Strand 2	B	1346	1348	anti-parallel
Strand 3	B	1441	1443	parallel
Strand 4	B	1427	1428	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1422	1423	first strand
Strand 2	B	1445	1449	anti-parallel
Strand 3	B	1352	1355	parallel
Strand 4	B	1372	1378	anti-parallel
Strand 5	B	1472	1477	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	72	first strand
Strand 2	C	119	123	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	172	first strand
Strand 2	C	204	207	parallel
Strand 3	C	239	243	parallel
Strand 4	C	283	288	parallel
Strand 5	C	140	146	parallel
Strand 6	C	127	132	anti-parallel
Strand 7	C	263	264	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	316	first strand
Strand 2	C	319	322	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	329	first strand
Strand 2	C	350	352	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1275	1277	first strand
Strand 2	C	1334	1337	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1303	1305	first strand
Strand 2	C	1308	1310	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1347	1348	first strand
Strand 2	C	1390	1391	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1422	1423	first strand
Strand 2	C	1445	1449	anti-parallel
Strand 3	C	1352	1355	parallel
Strand 4	C	1372	1378	anti-parallel
Strand 5	C	1472	1477	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1427	1428	first strand
Strand 2	C	1441	1442	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	72	first strand
Strand 2	D	119	123	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	172	first strand
Strand 2	D	204	207	parallel
Strand 3	D	239	243	parallel
Strand 4	D	283	288	parallel
Strand 5	D	140	146	parallel
Strand 6	D	127	132	anti-parallel
Strand 7	D	263	264	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	316	first strand
Strand 2	D	319	322	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	350	352	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1275	1277	first strand
Strand 2	D	1334	1337	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1303	1305	first strand
Strand 2	D	1308	1310	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1390	1391	first strand
Strand 2	D	1346	1348	anti-parallel
Strand 3	D	1441	1443	parallel
Strand 4	D	1427	1428	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1422	1423	first strand
Strand 2	D	1445	1449	anti-parallel
Strand 3	D	1352	1355	parallel
Strand 4	D	1372	1378	anti-parallel
Strand 5	D	1472	1477	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VQ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VQ1