Analysis of interatomic Contacts of Structural Units in PDB entry:
7VQ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VQ6 entry

There are 2 chains in PDB entry 7VQ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6THR 180
B
 SER 6THR 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 7VQ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
21 25Right-handed 310
Helix 3
AA3
A
38 48Right-handed alpha
Helix 4
AA4
A
61 63Right-handed 310
Helix 5
AA5
A
74 78Right-handed 310
Helix 6
AA6
A
81 90Right-handed alpha
Helix 7
AA7
A
132 143Right-handed alpha
Helix 8
AA8
A
170 179Right-handed alpha
Helix 9
AA9
B
9 13Right-handed 310
Helix 10
AB1
B
21 25Right-handed 310
Helix 11
AB2
B
38 49Right-handed alpha
Helix 12
AB3
B
61 63Right-handed 310
Helix 13
AB4
B
74 78Right-handed 310
Helix 14
AB5
B
81 91Right-handed alpha
Helix 15
AB6
B
103 107Right-handed 310
Helix 16
AB7
B
132 143Right-handed alpha
Helix 17
AB8
B
170 179Right-handed alpha
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There are 2 sheets in PDB entry 7VQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 60first strand
Strand 2
A
65 71anti-parallel
Strand 3
A
95 101anti-parallel
Strand 4
A
28 35parallel
Strand 5
B
123 129anti-parallel
Strand 6
B
165 169parallel
Strand 7
B
157 159anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
165 169anti-parallel
Strand 3
A
123 129parallel
Strand 4
B
28 36anti-parallel
Strand 5
B
95 101parallel
Strand 6
B
65 71anti-parallel
Strand 7
B
53 60anti-parallel
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