Analysis of interatomic Contacts of Structural Units in PDB entry:
7VQA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VQA entry

There are 2 chains in PDB entry 7VQA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8GLN 218
B
 PRO 9GLN 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 7VQA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 32Right-handed alpha
Helix 2
AA2
A
35 42Right-handed 310
Helix 3
AA3
A
43 58Right-handed alpha
Helix 4
AA4
A
70 74Right-handed 310
Helix 5
AA5
A
75 94Right-handed alpha
Helix 6
AA6
A
112 120Right-handed 310
Helix 7
AA7
A
138 145Right-handed alpha
Helix 8
AA8
A
199 203Right-handed 310
Helix 9
AA9
A
204 218Right-handed alpha
Helix 10
AB1
B
24 32Right-handed alpha
Helix 11
AB2
B
35 42Right-handed 310
Helix 12
AB3
B
43 58Right-handed alpha
Helix 13
AB4
B
70 74Right-handed 310
Helix 14
AB5
B
75 94Right-handed alpha
Helix 15
AB6
B
112 119Right-handed 310
Helix 16
AB7
B
138 145Right-handed alpha
Helix 17
AB8
B
153 158Right-handed alpha
Helix 18
AB9
B
199 203Right-handed 310
Helix 19
AC1
B
204 217Right-handed alpha
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There are 2 sheets in PDB entry 7VQA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
98 103anti-parallel
Strand 3
A
129 137parallel
Strand 4
A
61 68parallel
Strand 5
A
17 21parallel
Strand 6
A
170 173parallel
Strand 7
A
192 195parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
98 103anti-parallel
Strand 3
B
129 137parallel
Strand 4
B
61 68parallel
Strand 5
B
17 22parallel
Strand 6
B
170 174parallel
Strand 7
B
192 195parallel
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