Analysis of interatomic Contacts of Structural Units in PDB entry:
7VQM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VQM entry

There are 4 chains in PDB entry 7VQM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 29	LYS 623
B	THR 29	LYS 623
C	THR 29	LYS 623
D	THR 29	LYS 623

There are 59 helices in PDB entry 7VQM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	38	Right-handed 310
Helix 2	AA2	A	66	70	Right-handed 310
Helix 3	AA3	A	79	83	Right-handed 310
Helix 4	AA4	A	96	100	Right-handed 310
Helix 5	AA5	A	113	117	Right-handed 310
Helix 6	AA6	A	174	177	Right-handed 310
Helix 7	AA7	A	259	262	Right-handed 310
Helix 8	AA8	A	349	363	Right-handed alpha
Helix 9	AA9	A	377	387	Right-handed alpha
Helix 10	AB1	A	404	423	Right-handed alpha
Helix 11	AB2	A	440	458	Right-handed alpha
Helix 12	AB3	A	482	488	Right-handed 310
Helix 13	AB4	A	505	510	Right-handed alpha
Helix 14	AB5	A	542	558	Right-handed alpha
Helix 15	AB6	A	601	618	Right-handed alpha
Helix 16	AB7	B	34	38	Right-handed 310
Helix 17	AB8	B	66	70	Right-handed 310
Helix 18	AB9	B	79	83	Right-handed 310
Helix 19	AC1	B	96	100	Right-handed 310
Helix 20	AC2	B	109	113	Right-handed 310
Helix 21	AC3	B	174	177	Right-handed 310
Helix 22	AC4	B	259	262	Right-handed 310
Helix 23	AC5	B	349	363	Right-handed alpha
Helix 24	AC6	B	377	387	Right-handed alpha
Helix 25	AC7	B	404	423	Right-handed alpha
Helix 26	AC8	B	440	458	Right-handed alpha
Helix 27	AC9	B	482	488	Right-handed 310
Helix 28	AD1	B	505	510	Right-handed alpha
Helix 29	AD2	B	542	558	Right-handed alpha
Helix 30	AD3	B	601	618	Right-handed alpha
Helix 31	AD4	C	34	38	Right-handed 310
Helix 32	AD5	C	66	70	Right-handed 310
Helix 33	AD6	C	79	83	Right-handed 310
Helix 34	AD7	C	96	100	Right-handed 310
Helix 35	AD8	C	109	117	Right-handed 310
Helix 36	AD9	C	259	262	Right-handed 310
Helix 37	AE1	C	349	363	Right-handed alpha
Helix 38	AE2	C	377	387	Right-handed alpha
Helix 39	AE3	C	404	423	Right-handed alpha
Helix 40	AE4	C	440	458	Right-handed alpha
Helix 41	AE5	C	482	488	Right-handed 310
Helix 42	AE6	C	503	510	Right-handed 310
Helix 43	AE7	C	542	559	Right-handed alpha
Helix 44	AE8	C	602	618	Right-handed alpha
Helix 45	AE9	D	34	38	Right-handed 310
Helix 46	AF1	D	66	70	Right-handed 310
Helix 47	AF2	D	79	83	Right-handed 310
Helix 48	AF3	D	96	100	Right-handed 310
Helix 49	AF4	D	113	117	Right-handed 310
Helix 50	AF5	D	259	262	Right-handed 310
Helix 51	AF6	D	349	363	Right-handed alpha
Helix 52	AF7	D	377	387	Right-handed alpha
Helix 53	AF8	D	404	423	Right-handed alpha
Helix 54	AF9	D	440	458	Right-handed alpha
Helix 55	AG1	D	482	487	Right-handed 310
Helix 56	AG2	D	496	501	Right-handed alpha
Helix 57	AG3	D	503	510	Right-handed 310
Helix 58	AG4	D	542	559	Right-handed alpha
Helix 59	AG5	D	601	618	Right-handed alpha

There are 39 sheets in PDB entry 7VQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	214	219	anti-parallel
Strand 3	A	138	143	anti-parallel
Strand 4	A	169	172	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	105	first strand
Strand 2	A	45	52	anti-parallel
Strand 3	A	122	129	anti-parallel
Strand 4	A	182	189	anti-parallel
Strand 5	A	149	154	anti-parallel
Strand 6	A	157	163	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	232	first strand
Strand 2	A	235	247	anti-parallel
Strand 3	A	274	280	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	268	first strand
Strand 2	A	253	258	anti-parallel
Strand 3	A	295	301	anti-parallel
Strand 4	A	304	310	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	318	first strand
Strand 2	A	321	324	anti-parallel
Strand 3	A	327	329	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	336	first strand
Strand 2	A	367	370	parallel
Strand 3	A	389	393	parallel
Strand 4	A	428	435	parallel
Strand 5	A	462	468	parallel
Strand 6	A	491	494	parallel
Strand 7	A	520	524	parallel
Strand 8	A	563	566	parallel
Strand 9	A	331	336	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	345	346	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	478	first strand
Strand 2	A	511	512	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	575	first strand
Strand 2	A	588	589	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	214	219	anti-parallel
Strand 3	B	138	143	anti-parallel
Strand 4	B	169	172	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	45	51	anti-parallel
Strand 3	B	122	129	anti-parallel
Strand 4	B	182	189	anti-parallel
Strand 5	B	149	154	anti-parallel
Strand 6	B	157	163	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	209	210	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	232	first strand
Strand 2	B	235	247	anti-parallel
Strand 3	B	274	280	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	268	first strand
Strand 2	B	253	258	anti-parallel
Strand 3	B	295	301	anti-parallel
Strand 4	B	304	310	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	318	first strand
Strand 2	B	321	324	anti-parallel
Strand 3	B	327	329	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	336	first strand
Strand 2	B	367	370	parallel
Strand 3	B	389	393	parallel
Strand 4	B	428	435	parallel
Strand 5	B	462	467	parallel
Strand 6	B	491	494	parallel
Strand 7	B	520	524	parallel
Strand 8	B	563	566	parallel
Strand 9	B	331	336	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	345	346	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	478	first strand
Strand 2	B	511	512	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	574	575	first strand
Strand 2	B	588	589	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	214	219	anti-parallel
Strand 3	C	138	143	anti-parallel
Strand 4	C	169	172	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	105	first strand
Strand 2	C	45	51	anti-parallel
Strand 3	C	122	129	anti-parallel
Strand 4	C	182	189	anti-parallel
Strand 5	C	149	154	anti-parallel
Strand 6	C	157	163	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	209	210	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	231	first strand
Strand 2	C	238	247	anti-parallel
Strand 3	C	274	280	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	268	first strand
Strand 2	C	253	258	anti-parallel
Strand 3	C	295	301	anti-parallel
Strand 4	C	304	310	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	318	first strand
Strand 2	C	321	324	anti-parallel
Strand 3	C	327	329	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	332	first strand
Strand 2	C	563	566	parallel
Strand 3	C	520	524	parallel
Strand 4	C	491	494	parallel
Strand 5	C	462	467	parallel
Strand 6	C	428	435	parallel
Strand 7	C	389	393	parallel
Strand 8	C	367	370	parallel
Strand 9	C	335	336	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	345	346	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	478	first strand
Strand 2	C	511	512	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	574	575	first strand
Strand 2	C	588	589	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	214	219	anti-parallel
Strand 3	D	138	143	anti-parallel
Strand 4	D	169	172	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	105	first strand
Strand 2	D	45	51	anti-parallel
Strand 3	D	122	129	anti-parallel
Strand 4	D	182	189	anti-parallel
Strand 5	D	149	154	anti-parallel
Strand 6	D	157	163	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	227	first strand
Strand 2	D	235	247	anti-parallel
Strand 3	D	230	232	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	227	first strand
Strand 2	D	235	247	anti-parallel
Strand 3	D	274	280	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	268	first strand
Strand 2	D	253	258	anti-parallel
Strand 3	D	295	301	anti-parallel
Strand 4	D	304	310	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	315	318	first strand
Strand 2	D	321	324	anti-parallel
Strand 3	D	327	328	anti-parallel

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There are 8 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	462	466	first strand
Strand 2	D	428	435	parallel
Strand 3	D	389	393	parallel
Strand 4	D	367	370	parallel
Strand 5	D	331	336	parallel
Strand 6	D	563	566	parallel
Strand 7	D	520	524	parallel
Strand 8	D	491	494	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	345	346	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	477	478	first strand
Strand 2	D	511	512	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	574	575	first strand
Strand 2	D	588	589	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VQM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VQM