Analysis of interatomic Contacts of Structural Units in PDB entry:
7VQN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VQN entry

There are 4 chains in PDB entry 7VQN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 24	GLY 289
B	ASP 24	GLY 289
C	ASP 24	GLY 289
D	ASP 24	GLY 289

There are 50 helices in PDB entry 7VQN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	41	Right-handed alpha
Helix 2	AA2	A	70	84	Right-handed alpha
Helix 3	AA3	A	97	101	Right-handed 310
Helix 4	AA4	A	107	112	Right-handed 310
Helix 5	AA5	A	118	129	Right-handed alpha
Helix 6	AA6	A	130	141	Right-handed alpha
Helix 7	AA7	A	142	154	Right-handed alpha
Helix 8	AA8	A	166	170	Right-handed 310
Helix 9	AA9	A	181	194	Right-handed alpha
Helix 10	AB1	A	199	212	Right-handed alpha
Helix 11	AB2	A	219	224	Right-handed 310
Helix 12	AB3	A	273	288	Right-handed alpha
Helix 13	AB4	B	29	41	Right-handed alpha
Helix 14	AB5	B	70	84	Right-handed alpha
Helix 15	AB6	B	97	101	Right-handed 310
Helix 16	AB7	B	107	112	Right-handed 310
Helix 17	AB8	B	118	129	Right-handed alpha
Helix 18	AB9	B	130	141	Right-handed alpha
Helix 19	AC1	B	142	154	Right-handed alpha
Helix 20	AC2	B	166	170	Right-handed 310
Helix 21	AC3	B	181	194	Right-handed alpha
Helix 22	AC4	B	199	212	Right-handed alpha
Helix 23	AC5	B	219	224	Right-handed 310
Helix 24	AC6	B	273	288	Right-handed alpha
Helix 25	AC7	B	289	289	Right-handed 310
Helix 26	AC8	C	24	28	Right-handed 310
Helix 27	AC9	C	29	41	Right-handed alpha
Helix 28	AD1	C	70	84	Right-handed alpha
Helix 29	AD2	C	97	101	Right-handed 310
Helix 30	AD3	C	107	112	Right-handed 310
Helix 31	AD4	C	118	129	Right-handed alpha
Helix 32	AD5	C	130	142	Right-handed alpha
Helix 33	AD6	C	142	154	Right-handed alpha
Helix 34	AD7	C	166	170	Right-handed 310
Helix 35	AD8	C	181	194	Right-handed alpha
Helix 36	AD9	C	199	212	Right-handed alpha
Helix 37	AE1	C	219	224	Right-handed 310
Helix 38	AE2	C	273	288	Right-handed alpha
Helix 39	AE3	D	29	41	Right-handed alpha
Helix 40	AE4	D	70	84	Right-handed alpha
Helix 41	AE5	D	97	101	Right-handed 310
Helix 42	AE6	D	107	112	Right-handed 310
Helix 43	AE7	D	118	129	Right-handed alpha
Helix 44	AE8	D	130	141	Right-handed alpha
Helix 45	AE9	D	142	154	Right-handed alpha
Helix 46	AF1	D	166	170	Right-handed 310
Helix 47	AF2	D	181	194	Right-handed alpha
Helix 48	AF3	D	199	212	Right-handed alpha
Helix 49	AF4	D	219	224	Right-handed 310
Helix 50	AF5	D	273	288	Right-handed alpha

There are 12 sheets in PDB entry 7VQN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	43	50	anti-parallel
Strand 3	A	257	264	anti-parallel
Strand 4	A	243	250	anti-parallel
Strand 5	A	229	236	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	179	180	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	116	117	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	43	50	anti-parallel
Strand 3	B	257	264	anti-parallel
Strand 4	B	243	250	anti-parallel
Strand 5	B	229	236	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	179	180	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	94	first strand
Strand 2	B	116	117	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	43	50	anti-parallel
Strand 3	C	257	264	anti-parallel
Strand 4	C	243	250	anti-parallel
Strand 5	C	229	236	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	179	180	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	116	117	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	43	50	anti-parallel
Strand 3	D	257	264	anti-parallel
Strand 4	D	243	250	anti-parallel
Strand 5	D	229	236	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	66	first strand
Strand 2	D	179	180	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	116	117	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VQN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VQN