Analysis of interatomic Contacts of Structural Units in PDB entry:
7VR2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VR2 entry

There are 2 chains in PDB entry 7VR2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 344
B
 VAL 2GLU 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 7VR2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 23Right-handed 310
Helix 2
AA2
A
54 62Right-handed 310
Helix 3
AA3
A
127 133Right-handed 310
Helix 4
AA4
A
136 148Right-handed alpha
Helix 5
AA5
A
167 178Right-handed alpha
Helix 6
AA6
A
188 198Right-handed alpha
Helix 7
AA7
A
212 221Right-handed alpha
Helix 8
AA8
A
233 241Right-handed alpha
Helix 9
AA9
A
270 276Right-handed alpha
Helix 10
AB1
A
284 290Right-handed 310
Helix 11
AB2
A
291 305Right-handed alpha
Helix 12
AB3
A
320 330Right-handed alpha
Helix 13
AB4
B
21 23Right-handed 310
Helix 14
AB5
B
54 62Right-handed 310
Helix 15
AB6
B
127 133Right-handed 310
Helix 16
AB7
B
136 147Right-handed alpha
Helix 17
AB8
B
165 178Right-handed alpha
Helix 18
AB9
B
188 198Right-handed alpha
Helix 19
AC1
B
212 221Right-handed alpha
Helix 20
AC2
B
233 241Right-handed alpha
Helix 21
AC3
B
271 276Right-handed alpha
Helix 22
AC4
B
284 290Right-handed 310
Helix 23
AC5
B
291 305Right-handed alpha
Helix 24
AC6
B
320 330Right-handed alpha
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There are 7 sheets in PDB entry 7VR2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 12first strand
Strand 2
A
25 33anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
44 53anti-parallel
Strand 3
A
79 89anti-parallel
Strand 4
A
99 105anti-parallel
Strand 5
A
118 120anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
44 53anti-parallel
Strand 3
A
336 340anti-parallel
Strand 4
A
312 316parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
181 186parallel
Strand 3
A
157 160parallel
Strand 4
A
225 230parallel
Strand 5
A
244 252parallel
Strand 6
A
279 282parallel
Strand 7
B
279 282anti-parallel
Strand 8
B
244 252parallel
Strand 9
B
225 230parallel
Strand 10
B
157 160parallel
Strand 11
B
181 186parallel
Strand 12
B
203 206parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 12first strand
Strand 2
B
25 33anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
44 52anti-parallel
Strand 3
B
79 89anti-parallel
Strand 4
B
99 105anti-parallel
Strand 5
B
118 120anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
44 52anti-parallel
Strand 3
B
336 340anti-parallel
Strand 4
B
312 316parallel
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