Analysis of interatomic Contacts of Structural Units in PDB entry:
7VRG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VRG entry

There are 2 chains in PDB entry 7VRG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 14	ALA 553
B	TYR 14	ALA 553

There are 43 helices in PDB entry 7VRG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	47	Right-handed alpha
Helix 2	AA2	A	160	163	Right-handed 310
Helix 3	AA3	A	168	172	Right-handed 310
Helix 4	AA4	A	173	177	Right-handed 310
Helix 5	AA5	A	194	200	Right-handed 310
Helix 6	AA6	A	202	211	Right-handed alpha
Helix 7	AA7	A	223	229	Right-handed alpha
Helix 8	AA8	A	243	256	Right-handed alpha
Helix 9	AA9	A	271	277	Right-handed 310
Helix 10	AB1	A	279	297	Right-handed alpha
Helix 11	AB2	A	323	347	Right-handed alpha
Helix 12	AB3	A	359	364	Right-handed alpha
Helix 13	AB4	A	367	372	Right-handed alpha
Helix 14	AB5	A	373	375	Right-handed 310
Helix 15	AB6	A	403	407	Right-handed 310
Helix 16	AB7	A	412	423	Right-handed alpha
Helix 17	AB8	A	426	428	Right-handed 310
Helix 18	AB9	A	451	455	Right-handed 310
Helix 19	AC1	A	472	481	Right-handed alpha
Helix 20	AC2	A	510	524	Right-handed alpha
Helix 21	AC3	A	533	537	Right-handed 310
Helix 22	AC4	A	539	550	Right-handed alpha
Helix 23	AC5	B	43	47	Right-handed alpha
Helix 24	AC6	B	160	163	Right-handed 310
Helix 25	AC7	B	168	172	Right-handed 310
Helix 26	AC8	B	173	177	Right-handed 310
Helix 27	AC9	B	194	200	Right-handed 310
Helix 28	AD1	B	202	211	Right-handed alpha
Helix 29	AD2	B	223	229	Right-handed alpha
Helix 30	AD3	B	243	256	Right-handed alpha
Helix 31	AD4	B	271	277	Right-handed 310
Helix 32	AD5	B	279	297	Right-handed alpha
Helix 33	AD6	B	323	347	Right-handed alpha
Helix 34	AD7	B	359	364	Right-handed alpha
Helix 35	AD8	B	367	372	Right-handed alpha
Helix 36	AD9	B	403	407	Right-handed 310
Helix 37	AE1	B	412	422	Right-handed alpha
Helix 38	AE2	B	426	428	Right-handed 310
Helix 39	AE3	B	451	455	Right-handed 310
Helix 40	AE4	B	472	481	Right-handed alpha
Helix 41	AE5	B	510	524	Right-handed alpha
Helix 42	AE6	B	533	537	Right-handed 310
Helix 43	AE7	B	539	550	Right-handed alpha

There are 14 sheets in PDB entry 7VRG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	25	first strand
Strand 2	A	54	61	anti-parallel
Strand 3	A	89	95	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	119	124	parallel
Strand 3	A	99	108	anti-parallel
Strand 4	A	70	75	anti-parallel
Strand 5	A	78	84	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	119	124	parallel
Strand 3	A	99	108	anti-parallel
Strand 4	A	113	115	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	48	50	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	158	first strand
Strand 2	A	179	185	parallel
Strand 3	A	260	266	parallel
Strand 4	A	302	306	parallel
Strand 5	A	351	357	parallel
Strand 6	A	377	381	parallel
Strand 7	A	430	435	parallel
Strand 8	A	528	532	parallel
Strand 9	A	152	158	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	437	442	anti-parallel
Strand 3	A	469	471	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	459	460	first strand
Strand 2	A	437	442	anti-parallel
Strand 3	A	504	507	anti-parallel
Strand 4	A	494	499	anti-parallel
Strand 5	A	485	489	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	26	first strand
Strand 2	B	54	61	anti-parallel
Strand 3	B	88	95	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	119	124	parallel
Strand 3	B	99	108	anti-parallel
Strand 4	B	70	75	anti-parallel
Strand 5	B	78	83	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	119	124	parallel
Strand 3	B	99	108	anti-parallel
Strand 4	B	113	115	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	48	50	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	158	first strand
Strand 2	B	179	185	parallel
Strand 3	B	260	266	parallel
Strand 4	B	302	306	parallel
Strand 5	B	351	357	parallel
Strand 6	B	377	381	parallel
Strand 7	B	430	435	parallel
Strand 8	B	528	532	parallel
Strand 9	B	152	158	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	437	442	anti-parallel
Strand 3	B	469	471	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	460	first strand
Strand 2	B	437	442	anti-parallel
Strand 3	B	504	507	anti-parallel
Strand 4	B	494	499	anti-parallel
Strand 5	B	485	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VRG

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VRG