Analysis of interatomic Contacts of Structural Units in PDB entry:
7VRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VRJ entry

There are 36 chains in PDB entry 7VRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 CYS 23SER 335
L
 ALA 1TRP 277
M
 PRO 1THR 318
H
 MET 1LEU 259
A
 HIS 6SER 48
B
 ASN 4LEU 47
D
 SER 2PRO 50
E
 LYS 5LEU 47
F
 SER 2PRO 50
G
 SER 6LEU 47
I
 HIS 6SER 48
J
 THR 8LEU 47
K
 HIS 6SER 48
N
 LEU 10LEU 47
O
 HIS 6SER 48
P
 SER 6LEU 47
Q
 HIS 6SER 48
R
 MET 7LEU 47
S
 SER 2ALA 52
T
 SER 6LEU 47
U
 SER 2ALA 51
V
 SER 6LEU 47
W
 SER 2GLN 56
X
 SER 6LEU 47
Y
 SER 2ARG 64
Z
 MET 7LEU 47
1
 HIS 6SER 48
2
 MET 7LEU 47
3
 PRO 2ARG 66
4
 SER 6LEU 47
5
 HIS 6GLY 47
6
 LEU 10LEU 47
7
 HIS 6SER 48
8
 THR 11LEU 47
9
 HIS 6GLY 47
0
 SER 6LEU 47
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are106 helices in PDB entry 7VRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
45 55Right-handed alpha
Helix 2
AA2
C
71 75Right-handed 310
Helix 3
AA3
C
86 101Right-handed alpha
Helix 4
AA4
C
121 141Right-handed alpha
Helix 5
AA5
C
141 146Right-handed alpha
Helix 6
AA6
C
154 159Right-handed alpha
Helix 7
AA7
C
189 193Right-handed 310
Helix 8
AA8
C
201 207Right-handed alpha
Helix 9
AA9
C
227 246Right-handed alpha
Helix 10
AB1
C
248 252Right-handed 310
Helix 11
AB2
C
265 286Right-handed alpha
Helix 12
AB3
C
287 292Right-handed 310
Helix 13
AB4
C
294 298Right-handed 310
Helix 14
AB5
C
309 314Right-handed alpha
Helix 15
AB6
C
318 323Right-handed 310
Helix 16
AB7
C
329 333Right-handed 310
Helix 17
AB8
L
6 10Right-handed 310
Helix 18
AB9
L
31 56Right-handed alpha
Helix 19
AC1
L
75 79Right-handed 310
Helix 20
AC2
L
84 87Right-handed 310
Helix 21
AC3
L
88 117Right-handed alpha
Helix 22
AC4
L
120 138Right-handed alpha
Helix 23
AC5
L
138 145Right-handed alpha
Helix 24
AC6
L
146 150Right-handed 310
Helix 25
AC7
L
156 168Right-handed alpha
Helix 26
AC8
L
169 170Right-handed 310
Helix 27
AC9
L
171 174Right-handed 310
Helix 28
AD1
L
175 204Right-handed alpha
Helix 29
AD2
L
213 225Right-handed alpha
Helix 30
AD3
L
230 255Right-handed alpha
Helix 31
AD4
L
264 267Right-handed 310
Helix 32
AD5
L
268 273Right-handed alpha
Helix 33
AD6
M
38 42Right-handed 310
Helix 34
AD7
M
53 77Right-handed alpha
Helix 35
AD8
M
81 88Right-handed alpha
Helix 36
AD9
M
98 102Right-handed 310
Helix 37
AE1
M
107 110Right-handed 310
Helix 38
AE2
M
111 139Right-handed alpha
Helix 39
AE3
M
143 161Right-handed alpha
Helix 40
AE4
M
161 168Right-handed alpha
Helix 41
AE5
M
169 173Right-handed 310
Helix 42
AE6
M
178 192Right-handed alpha
Helix 43
AE7
M
194 197Right-handed 310
Helix 44
AE8
M
198 225Right-handed alpha
Helix 45
AE9
M
226 229Right-handed 310
Helix 46
AF1
M
232 239Right-handed alpha
Helix 47
AF2
M
241 256Right-handed alpha
Helix 48
AF3
M
263 285Right-handed alpha
Helix 49
AF4
M
292 300Right-handed alpha
Helix 50
AF5
H
10 35Right-handed alpha
Helix 51
AF6
H
43 49Right-handed alpha
Helix 52
AF7
H
106 110Right-handed 310
Helix 53
AF8
H
111 115Right-handed 310
Helix 54
AF9
H
198 200Right-handed 310
Helix 55
AG1
H
215 221Right-handed 310
Helix 56
AG2
H
232 250Right-handed alpha
Helix 57
AG3
A
6 11Right-handed 310
Helix 58
AG4
A
13 38Right-handed alpha
Helix 59
AG5
B
11 44Right-handed alpha
Helix 60
AG6
D
2 11Right-handed 310
Helix 61
AG7
D
13 38Right-handed alpha
Helix 62
AG8
E
11 42Right-handed alpha
Helix 63
AG9
F
4 11Right-handed 310
Helix 64
AH1
F
13 39Right-handed alpha
Helix 65
AH2
G
11 44Right-handed alpha
Helix 66
AH3
I
7 11Right-handed 310
Helix 67
AH4
I
13 39Right-handed alpha
Helix 68
AH5
J
13 44Right-handed alpha
Helix 69
AH6
K
5 11Right-handed 310
Helix 70
AH7
K
13 39Right-handed alpha
Helix 71
AH8
N
11 44Right-handed alpha
Helix 72
AH9
O
5 11Right-handed 310
Helix 73
AI1
O
13 39Right-handed alpha
Helix 74
AI2
P
11 44Right-handed alpha
Helix 75
AI3
Q
6 11Right-handed 310
Helix 76
AI4
Q
13 39Right-handed alpha
Helix 77
AI5
R
12 44Right-handed alpha
Helix 78
AI6
S
4 11Right-handed 310
Helix 79
AI7
S
13 38Right-handed alpha
Helix 80
AI8
T
11 44Right-handed alpha
Helix 81
AI9
U
2 11Right-handed 310
Helix 82
AJ1
U
13 38Right-handed alpha
Helix 83
AJ2
V
11 44Right-handed alpha
Helix 84
AJ3
W
4 11Right-handed 310
Helix 85
AJ4
W
13 38Right-handed alpha
Helix 86
AJ5
X
12 42Right-handed alpha
Helix 87
AJ6
Y
2 11Right-handed 310
Helix 88
AJ7
Y
13 39Right-handed alpha
Helix 89
AJ8
Z
11 44Right-handed alpha
Helix 90
AJ9
1
7 12Right-handed alpha
Helix 91
AK1
1
13 38Right-handed alpha
Helix 92
AK2
2
11 44Right-handed alpha
Helix 93
AK3
3
4 11Right-handed 310
Helix 94
AK4
3
13 39Right-handed alpha
Helix 95
AK5
3
43 47Right-handed 310
Helix 96
AK6
4
11 44Right-handed alpha
Helix 97
AK7
5
6 11Right-handed 310
Helix 98
AK8
5
13 38Right-handed alpha
Helix 99
AK9
6
11 15Right-handed 310
Helix 100
AL1
6
16 44Right-handed alpha
Helix 101
AL2
7
13 38Right-handed alpha
Helix 102
AL3
8
12 16Right-handed alpha
Helix 103
AL4
8
18 44Right-handed alpha
Helix 104
AL5
9
7 11Right-handed 310
Helix 105
AL6
9
13 38Right-handed alpha
Helix 106
AL7
0
11 44Right-handed alpha
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There are 9 sheets in PDB entry 7VRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
29 32first strand
Strand 2
C
41 44anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
25 26first strand
Strand 2
L
29 30anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
70 71first strand
Strand 2
L
153 154anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
12 13first strand
Strand 2
H
143 144anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
93 94first strand
Strand 2
M
176 177anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
66 69first strand
Strand 2
H
74 77anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
90 91first strand
Strand 2
H
100 101anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
133 135first strand
Strand 2
H
163 173anti-parallel
Strand 3
H
179 186anti-parallel
Strand 4
H
191 196anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
133 135first strand
Strand 2
H
163 173anti-parallel
Strand 3
H
155 157anti-parallel
Strand 4
H
208 210parallel
Strand 5
H
201 203anti-parallel
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