Analysis of interatomic Contacts of Structural Units in PDB entry:
7VRS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VRS entry

There are 3 chains in PDB entry 7VRS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLN 444
B
 ALA 1GLN 444
C
 MET 2VAL 87
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 7VRS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 38Right-handed alpha
Helix 2
AA2
A
42 51Right-handed alpha
Helix 3
AA3
A
67 80Right-handed alpha
Helix 4
AA4
A
113 120Right-handed alpha
Helix 5
AA5
A
120 135Right-handed alpha
Helix 6
AA6
A
141 148Right-handed alpha
Helix 7
AA7
A
157 179Right-handed alpha
Helix 8
AA8
A
191 201Right-handed alpha
Helix 9
AA9
A
204 223Right-handed alpha
Helix 10
AB1
A
235 246Right-handed alpha
Helix 11
AB2
A
269 283Right-handed alpha
Helix 12
AB3
A
298 303Right-handed 310
Helix 13
AB4
A
304 312Right-handed alpha
Helix 14
AB5
A
339 349Right-handed alpha
Helix 15
AB6
A
353 363Right-handed alpha
Helix 16
AB7
A
377 387Right-handed alpha
Helix 17
AB8
A
404 419Right-handed alpha
Helix 18
AB9
A
423 429Right-handed 310
Helix 19
AC1
B
20 38Right-handed alpha
Helix 20
AC2
B
42 54Right-handed alpha
Helix 21
AC3
B
67 80Right-handed alpha
Helix 22
AC4
B
113 120Right-handed alpha
Helix 23
AC5
B
120 136Right-handed alpha
Helix 24
AC6
B
141 148Right-handed alpha
Helix 25
AC7
B
157 179Right-handed alpha
Helix 26
AC8
B
191 200Right-handed alpha
Helix 27
AC9
B
204 223Right-handed alpha
Helix 28
AD1
B
235 245Right-handed alpha
Helix 29
AD2
B
269 284Right-handed alpha
Helix 30
AD3
B
298 303Right-handed 310
Helix 31
AD4
B
304 312Right-handed alpha
Helix 32
AD5
B
339 349Right-handed alpha
Helix 33
AD6
B
353 363Right-handed alpha
Helix 34
AD7
B
377 388Right-handed alpha
Helix 35
AD8
B
404 418Right-handed alpha
Helix 36
AD9
B
423 429Right-handed 310
Helix 37
AE1
C
6 27Right-handed alpha
Helix 38
AE2
C
39 45Right-handed alpha
Helix 39
AE3
C
46 62Right-handed alpha
Helix 40
AE4
C
68 73Right-handed alpha
Helix 41
AE5
C
75 87Right-handed alpha
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There are 7 sheets in PDB entry 7VRS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 18first strand
Strand 2
A
59 65anti-parallel
Strand 3
A
87 91anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
324 325anti-parallel
Strand 3
A
185 188parallel
Strand 4
A
98 102parallel
Strand 5
A
367 370parallel
Strand 6
A
393 395parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
228 232anti-parallel
Strand 3
A
263 268anti-parallel
Strand 4
A
253 260anti-parallel
Strand 5
A
351 352parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 18first strand
Strand 2
B
59 65anti-parallel
Strand 3
B
87 91anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 188first strand
Strand 2
B
98 102parallel
Strand 3
B
367 370parallel
Strand 4
B
393 396parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
228 232anti-parallel
Strand 3
B
263 268anti-parallel
Strand 4
B
253 260anti-parallel
Strand 5
B
351 352parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 325first strand
Strand 2
B
332 333anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il