Analysis of interatomic Contacts of Structural Units in PDB entry:
7VRU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VRU entry

There are 5 chains in PDB entry 7VRU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 3GLU 500
C
 TRP 10ASN 382
H
 T 1 G 25
I
 C -25 A -1
A
 MSE 1ARG 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 7VRU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
3 29Right-handed alpha
Helix 2
AA2
B
33 36Right-handed 310
Helix 3
AA3
B
37 59Right-handed alpha
Helix 4
AA4
B
68 73Right-handed alpha
Helix 5
AA5
B
74 78Right-handed 310
Helix 6
AA6
B
83 86Right-handed 310
Helix 7
AA7
B
87 94Right-handed alpha
Helix 8
AA8
B
97 112Right-handed alpha
Helix 9
AA9
B
113 117Right-handed 310
Helix 10
AB1
B
132 145Right-handed alpha
Helix 11
AB2
B
156 170Right-handed alpha
Helix 12
AB3
B
183 195Right-handed alpha
Helix 13
AB4
B
210 223Right-handed alpha
Helix 14
AB5
B
226 230Right-handed 310
Helix 15
AB6
B
238 253Right-handed alpha
Helix 16
AB7
B
294 300Right-handed alpha
Helix 17
AB8
B
316 327Right-handed alpha
Helix 18
AB9
B
341 346Right-handed alpha
Helix 19
AC1
B
349 359Right-handed alpha
Helix 20
AC2
B
390 394Right-handed 310
Helix 21
AC3
B
416 429Right-handed alpha
Helix 22
AC4
B
430 435Right-handed 310
Helix 23
AC5
B
442 448Right-handed alpha
Helix 24
AC6
B
453 457Right-handed 310
Helix 25
AC7
B
468 497Right-handed alpha
Helix 26
AC8
C
15 18Right-handed alpha
Helix 27
AC9
C
38 42Right-handed 310
Helix 28
AD1
C
54 58Right-handed 310
Helix 29
AD2
C
76 80Right-handed 310
Helix 30
AD3
C
108 115Right-handed alpha
Helix 31
AD4
C
116 126Right-handed alpha
Helix 32
AD5
C
136 141Right-handed alpha
Helix 33
AD6
C
149 187Right-handed alpha
Helix 34
AD7
C
200 203Right-handed alpha
Helix 35
AD8
C
213 217Right-handed 310
Helix 36
AD9
C
229 231Right-handed 310
Helix 37
AE1
C
247 253Right-handed alpha
Helix 38
AE2
C
255 259Right-handed 310
Helix 39
AE3
C
270 274Right-handed 310
Helix 40
AE4
C
303 313Right-handed alpha
Helix 41
AE5
C
313 324Right-handed alpha
Helix 42
AE6
C
333 339Right-handed alpha
Helix 43
AE7
C
346 358Right-handed alpha
Helix 44
AE8
C
359 361Right-handed 310
Helix 45
AE9
C
362 381Right-handed alpha
Helix 46
AF1
A
5 21Right-handed alpha
Helix 47
AF2
A
29 58Right-handed alpha
Helix 48
AF3
A
61 69Right-handed 310
Helix 49
AF4
A
78 85Right-handed alpha
Helix 50
AF5
A
88 104Right-handed alpha
Helix 51
AF6
A
105 108Right-handed 310
Helix 52
AF7
A
123 136Right-handed alpha
Helix 53
AF8
A
147 165Right-handed alpha
Helix 54
AF9
A
166 168Right-handed 310
Helix 55
AG1
A
174 186Right-handed alpha
Helix 56
AG2
A
201 214Right-handed alpha
Helix 57
AG3
A
217 221Right-handed 310
Helix 58
AG4
A
229 243Right-handed alpha
Helix 59
AG5
A
285 290Right-handed alpha
Helix 60
AG6
A
307 318Right-handed alpha
Helix 61
AG7
A
331 336Right-handed alpha
Helix 62
AG8
A
337 350Right-handed alpha
Helix 63
AG9
A
381 385Right-handed 310
Helix 64
AH1
A
407 425Right-handed alpha
Helix 65
AH2
A
440 446Right-handed alpha
Helix 66
AH3
A
451 455Right-handed 310
Helix 67
AH4
A
466 495Right-handed alpha
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There are 13 sheets in PDB entry 7VRU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 261first strand
Strand 2
B
231 236parallel
Strand 3
B
201 204parallel
Strand 4
B
281 284parallel
Strand 5
B
334 339parallel
Strand 6
B
380 386anti-parallel
Strand 7
B
362 368anti-parallel
Strand 8
B
396 401parallel
Strand 9
B
437 441anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 272first strand
Strand 2
B
275 276anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
407 409first strand
Strand 2
B
412 414anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 14first strand
Strand 2
C
144 147anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 21first strand
Strand 2
C
96 100anti-parallel
Strand 3
C
70 72anti-parallel
Strand 4
C
82 84anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 26first strand
Strand 2
C
62 65anti-parallel
Strand 3
C
89 91anti-parallel
Strand 4
C
36 37parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
197 199first strand
Strand 2
C
341 343anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 209first strand
Strand 2
C
293 298anti-parallel
Strand 3
C
265 268anti-parallel
Strand 4
C
277 279anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
244 246first strand
Strand 2
C
225 228anti-parallel
Strand 3
C
287 289parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 234first strand
Strand 2
C
237 238anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 326first strand
Strand 2
C
330 331anti-parallel
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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
222 227parallel
Strand 3
A
192 195parallel
Strand 4
A
270 275parallel
Strand 5
A
319 329parallel
Strand 6
A
371 377anti-parallel
Strand 7
A
353 359anti-parallel
Strand 8
A
387 393parallel
Strand 9
A
435 439anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
266 267anti-parallel
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