Analysis of interatomic Contacts of Structural Units in PDB entry:
7VRX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VRX entry

There are 8 chains in PDB entry 7VRX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 12	SER 232
A	ALA 234	LYS 382
B	VAL 12	SER 232
B	ALA 234	GLU 378
C	LEU 13	SER 232
C	ALA 234	LEU 380
D	LEU 13	SER 232
D	ALA 234	LYS 382

There are 65 helices in PDB entry 7VRX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	19	Right-handed alpha
Helix 2	AA2	A	45	54	Right-handed alpha
Helix 3	AA3	A	58	63	Right-handed alpha
Helix 4	AA4	A	70	85	Right-handed alpha
Helix 5	AA5	A	97	110	Right-handed alpha
Helix 6	AA6	A	123	133	Right-handed alpha
Helix 7	AA7	A	151	162	Right-handed alpha
Helix 8	AA8	A	183	198	Right-handed alpha
Helix 9	AA9	A	237	241	Right-handed 310
Helix 10	AB1	A	253	265	Right-handed alpha
Helix 11	AB2	A	270	282	Right-handed alpha
Helix 12	AB3	A	284	293	Right-handed alpha
Helix 13	AB4	A	295	306	Right-handed alpha
Helix 14	AB5	A	307	310	Right-handed 310
Helix 15	AB6	A	333	340	Right-handed alpha
Helix 16	AB7	A	353	356	Right-handed 310
Helix 17	AB8	A	371	376	Right-handed alpha
Helix 18	AB9	B	14	19	Right-handed alpha
Helix 19	AC1	B	45	56	Right-handed alpha
Helix 20	AC2	B	58	63	Right-handed alpha
Helix 21	AC3	B	70	86	Right-handed alpha
Helix 22	AC4	B	97	110	Right-handed alpha
Helix 23	AC5	B	123	133	Right-handed alpha
Helix 24	AC6	B	151	162	Right-handed alpha
Helix 25	AC7	B	183	198	Right-handed alpha
Helix 26	AC8	B	237	241	Right-handed 310
Helix 27	AC9	B	253	265	Right-handed alpha
Helix 28	AD1	B	270	282	Right-handed alpha
Helix 29	AD2	B	285	294	Right-handed alpha
Helix 30	AD3	B	295	306	Right-handed alpha
Helix 31	AD4	B	307	310	Right-handed 310
Helix 32	AD5	B	333	341	Right-handed alpha
Helix 33	AD6	B	353	356	Right-handed 310
Helix 34	AD7	C	14	19	Right-handed alpha
Helix 35	AD8	C	45	56	Right-handed alpha
Helix 36	AD9	C	58	63	Right-handed alpha
Helix 37	AE1	C	70	85	Right-handed alpha
Helix 38	AE2	C	97	110	Right-handed alpha
Helix 39	AE3	C	123	133	Right-handed alpha
Helix 40	AE4	C	151	162	Right-handed alpha
Helix 41	AE5	C	183	198	Right-handed alpha
Helix 42	AE6	C	237	241	Right-handed 310
Helix 43	AE7	C	253	265	Right-handed alpha
Helix 44	AE8	C	270	282	Right-handed alpha
Helix 45	AE9	C	285	293	Right-handed alpha
Helix 46	AF1	C	295	306	Right-handed alpha
Helix 47	AF2	C	307	310	Right-handed 310
Helix 48	AF3	C	333	344	Right-handed alpha
Helix 49	AF4	C	353	356	Right-handed 310
Helix 50	AF5	D	14	19	Right-handed alpha
Helix 51	AF6	D	45	56	Right-handed alpha
Helix 52	AF7	D	58	63	Right-handed alpha
Helix 53	AF8	D	70	84	Right-handed alpha
Helix 54	AF9	D	97	110	Right-handed alpha
Helix 55	AG1	D	123	133	Right-handed alpha
Helix 56	AG2	D	151	162	Right-handed alpha
Helix 57	AG3	D	183	198	Right-handed alpha
Helix 58	AG4	D	237	241	Right-handed 310
Helix 59	AG5	D	253	265	Right-handed alpha
Helix 60	AG6	D	270	282	Right-handed alpha
Helix 61	AG7	D	285	293	Right-handed alpha
Helix 62	AG8	D	295	306	Right-handed alpha
Helix 63	AG9	D	307	310	Right-handed 310
Helix 64	AH1	D	333	340	Right-handed alpha
Helix 65	AH2	D	353	356	Right-handed 310

There are 10 sheets in PDB entry 7VRX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	347	348	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	243	248	anti-parallel
Strand 3	A	225	230	anti-parallel
Strand 4	A	200	204	parallel
Strand 5	A	168	172	parallel
Strand 6	A	115	119	parallel
Strand 7	A	137	141	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	316	first strand
Strand 2	A	322	326	anti-parallel
Strand 3	A	360	364	anti-parallel
Strand 4	A	350	351	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	95	first strand
Strand 2	B	243	248	anti-parallel
Strand 3	B	225	230	anti-parallel
Strand 4	B	200	204	parallel
Strand 5	B	168	172	parallel
Strand 6	B	115	119	parallel
Strand 7	B	137	141	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	314	316	first strand
Strand 2	B	322	326	anti-parallel
Strand 3	B	360	364	anti-parallel
Strand 4	B	350	351	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	95	first strand
Strand 2	C	243	248	anti-parallel
Strand 3	C	225	230	anti-parallel
Strand 4	C	200	204	parallel
Strand 5	C	168	172	parallel
Strand 6	C	115	119	parallel
Strand 7	C	137	141	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	314	316	first strand
Strand 2	C	322	326	anti-parallel
Strand 3	C	360	364	anti-parallel
Strand 4	C	350	351	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	347	348	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	95	first strand
Strand 2	D	243	248	anti-parallel
Strand 3	D	225	230	anti-parallel
Strand 4	D	200	204	parallel
Strand 5	D	168	172	parallel
Strand 6	D	115	119	parallel
Strand 7	D	137	141	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	314	316	first strand
Strand 2	D	322	326	anti-parallel
Strand 3	D	360	364	anti-parallel
Strand 4	D	350	351	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VRX

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VRX