Analysis of interatomic Contacts of Structural Units in PDB entry:
7VS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VS8 entry

There are 2 chains in PDB entry 7VS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 231GLY 540
B
 THR 231GLY 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7VS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
240 244Right-handed 310
Helix 2
AA2
A
286 290Right-handed 310
Helix 3
AA3
A
301 303Right-handed 310
Helix 4
AA4
A
344 349Right-handed 310
Helix 5
AA5
A
458 469Right-handed alpha
Helix 6
AA6
A
510 515Right-handed 310
Helix 7
AA7
B
240 244Right-handed 310
Helix 8
AA8
B
286 290Right-handed 310
Helix 9
AA9
B
301 303Right-handed 310
Helix 10
AB1
B
344 349Right-handed 310
Helix 11
AB2
B
458 469Right-handed alpha
Helix 12
AB3
B
510 515Right-handed 310
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There are 6 sheets in PDB entry 7VS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 258first strand
Strand 2
A
434 441anti-parallel
Strand 3
A
452 455anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 258first strand
Strand 2
A
434 441anti-parallel
Strand 3
A
500 503anti-parallel
Strand 4
A
489 496anti-parallel
Strand 5
A
476 482anti-parallel
Strand 6
A
520 527anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
388 398parallel
Strand 3
A
334 342anti-parallel
Strand 4
A
354 359anti-parallel
Strand 5
A
372 379anti-parallel
Strand 6
A
304 310anti-parallel
Strand 7
A
292 300anti-parallel
Strand 8
A
388 398anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 258first strand
Strand 2
B
434 441anti-parallel
Strand 3
B
452 455anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 258first strand
Strand 2
B
434 441anti-parallel
Strand 3
B
501 503anti-parallel
Strand 4
B
489 495anti-parallel
Strand 5
B
476 482anti-parallel
Strand 6
B
520 527anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 445first strand
Strand 2
B
388 398parallel
Strand 3
B
334 342anti-parallel
Strand 4
B
354 359anti-parallel
Strand 5
B
372 379anti-parallel
Strand 6
B
304 310anti-parallel
Strand 7
B
292 300anti-parallel
Strand 8
B
388 398anti-parallel
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