Analysis of interatomic Contacts of Structural Units in PDB entry:
7VSG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VSG entry

There are 3 chains in PDB entry 7VSG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 19THR 408
A
 LYS 410ARG 1091
B
 ARG 27TYR 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 7VSG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 66Right-handed alpha
Helix 2
AA2
A
66 82Right-handed alpha
Helix 3
AA3
A
87 122Right-handed alpha
Helix 4
AA4
A
137 141Right-handed 310
Helix 5
AA5
A
166 168Right-handed 310
Helix 6
AA6
A
175 180Right-handed alpha
Helix 7
AA7
A
282 315Right-handed alpha
Helix 8
AA8
A
328 333Right-handed alpha
Helix 9
AA9
A
335 351Right-handed alpha
Helix 10
AB1
A
352 355Right-handed 310
Helix 11
AB2
A
356 371Right-handed alpha
Helix 12
AB3
A
371 377Right-handed alpha
Helix 13
AB4
A
397 403Right-handed 310
Helix 14
AB5
A
655 666Right-handed alpha
Helix 15
AB6
A
677 688Right-handed alpha
Helix 16
AB7
A
708 726Right-handed alpha
Helix 17
AB8
A
743 745Right-handed 310
Helix 18
AB9
A
752 762Right-handed alpha
Helix 19
AC1
A
763 766Right-handed 310
Helix 20
AC2
A
770 780Right-handed alpha
Helix 21
AC3
A
791 804Right-handed alpha
Helix 22
AC4
A
820 827Right-handed alpha
Helix 23
AC5
A
839 845Right-handed alpha
Helix 24
AC6
A
853 895Right-handed alpha
Helix 25
AC7
A
904 914Right-handed alpha
Helix 26
AC8
A
916 926Right-handed alpha
Helix 27
AC9
A
931 938Right-handed alpha
Helix 28
AD1
A
939 944Right-handed 310
Helix 29
AD2
A
948 951Right-handed 310
Helix 30
AD3
A
952 978Right-handed alpha
Helix 31
AD4
A
991 1015Right-handed alpha
Helix 32
AD5
A
1019 1041Right-handed alpha
Helix 33
AD6
A
1055 1062Right-handed alpha
Helix 34
AD7
A
1063 1090Right-handed alpha
Helix 35
AD8
B
46 75Right-handed alpha
Helix 36
AD9
B
91 96Right-handed alpha
Helix 37
AE1
B
131 136Right-handed alpha
Helix 38
AE2
B
139 144Right-handed alpha
Helix 39
AE3
B
146 152Right-handed alpha
Helix 40
AE4
B
172 177Right-handed alpha
Helix 41
AE5
B
206 212Right-handed alpha
Helix 42
AE6
B
222 227Right-handed alpha
Helix 43
AE7
B
239 243Right-handed 310
Helix 44
AE8
B
254 262Right-handed alpha
Helix 45
AE9
B
322 349Right-handed alpha
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There are 10 sheets in PDB entry 7VSG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
208 211anti-parallel
Strand 3
A
223 224anti-parallel
Strand 4
A
238 239anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
125 129anti-parallel
Strand 3
A
146 149anti-parallel
Strand 4
A
257 260anti-parallel
Strand 5
A
159 164anti-parallel
Strand 6
A
244 245anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 188first strand
Strand 2
A
170 174anti-parallel
Strand 3
A
250 251anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 382first strand
Strand 2
A
387 388anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
847 848anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
669 671first strand
Strand 2
A
405 407parallel
Strand 3
A
811 815parallel
Strand 4
A
829 832parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 700first strand
Strand 2
A
747 751parallel
Strand 3
A
785 787parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
307 314anti-parallel
Strand 3
B
118 125anti-parallel
Strand 4
B
269 276anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 109first strand
Strand 2
B
290 295anti-parallel
Strand 3
B
183 188anti-parallel
Strand 4
B
194 196anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
166 167anti-parallel
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