Analysis of interatomic Contacts of Structural Units in PDB entry:
7VSH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VSH entry

There are 2 chains in PDB entry 7VSH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 19ARG 1091
C
 ARG 27TYR 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 7VSH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 64Right-handed alpha
Helix 2
AA2
A
66 82Right-handed alpha
Helix 3
AA3
A
88 122Right-handed alpha
Helix 4
AA4
A
166 168Right-handed 310
Helix 5
AA5
A
175 180Right-handed alpha
Helix 6
AA6
A
270 274Right-handed 310
Helix 7
AA7
A
282 314Right-handed alpha
Helix 8
AA8
A
328 333Right-handed alpha
Helix 9
AA9
A
335 351Right-handed alpha
Helix 10
AB1
A
352 355Right-handed 310
Helix 11
AB2
A
358 371Right-handed alpha
Helix 12
AB3
A
371 377Right-handed alpha
Helix 13
AB4
A
396 402Right-handed 310
Helix 14
AB5
A
457 468Right-handed alpha
Helix 15
AB6
A
480 484Right-handed 310
Helix 16
AB7
A
495 508Right-handed alpha
Helix 17
AB8
A
565 570Right-handed alpha
Helix 18
AB9
A
574 591Right-handed alpha
Helix 19
AC1
A
604 621Right-handed alpha
Helix 20
AC2
A
624 633Right-handed alpha
Helix 21
AC3
A
655 666Right-handed alpha
Helix 22
AC4
A
677 688Right-handed alpha
Helix 23
AC5
A
707 726Right-handed alpha
Helix 24
AC6
A
753 761Right-handed alpha
Helix 25
AC7
A
770 780Right-handed alpha
Helix 26
AC8
A
791 804Right-handed alpha
Helix 27
AC9
A
820 827Right-handed alpha
Helix 28
AD1
A
839 844Right-handed alpha
Helix 29
AD2
A
853 861Right-handed alpha
Helix 30
AD3
A
861 895Right-handed alpha
Helix 31
AD4
A
904 914Right-handed alpha
Helix 32
AD5
A
917 924Right-handed alpha
Helix 33
AD6
A
931 938Right-handed alpha
Helix 34
AD7
A
941 946Right-handed alpha
Helix 35
AD8
A
948 951Right-handed 310
Helix 36
AD9
A
952 976Right-handed alpha
Helix 37
AE1
A
977 980Right-handed 310
Helix 38
AE2
A
991 1015Right-handed alpha
Helix 39
AE3
A
1019 1041Right-handed alpha
Helix 40
AE4
A
1055 1061Right-handed alpha
Helix 41
AE5
A
1063 1078Right-handed alpha
Helix 42
AE6
A
1078 1090Right-handed alpha
Helix 43
AE7
C
46 75Right-handed alpha
Helix 44
AE8
C
89 95Right-handed 310
Helix 45
AE9
C
131 136Right-handed alpha
Helix 46
AF1
C
146 152Right-handed alpha
Helix 47
AF2
C
154 161Right-handed 310
Helix 48
AF3
C
172 177Right-handed alpha
Helix 49
AF4
C
206 212Right-handed alpha
Helix 50
AF5
C
222 227Right-handed alpha
Helix 51
AF6
C
239 243Right-handed 310
Helix 52
AF7
C
246 250Right-handed 310
Helix 53
AF8
C
254 262Right-handed alpha
Helix 54
AF9
C
301 305Right-handed 310
Helix 55
AG1
C
322 350Right-handed alpha
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There are 9 sheets in PDB entry 7VSH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 23first strand
Strand 2
A
208 211anti-parallel
Strand 3
A
223 224anti-parallel
Strand 4
A
238 239anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
124 128anti-parallel
Strand 3
A
146 150anti-parallel
Strand 4
A
256 263anti-parallel
Strand 5
A
158 164anti-parallel
Strand 6
A
244 245anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
170 174anti-parallel
Strand 3
A
250 252anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
847 849anti-parallel
Strand 3
A
829 833parallel
Strand 4
A
811 815parallel
Strand 5
A
405 408parallel
Strand 6
A
669 673parallel
Strand 7
A
785 788parallel
Strand 8
A
747 752parallel
Strand 9
A
696 700parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
415 422first strand
Strand 2
A
647 652anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 512first strand
Strand 2
A
519 523anti-parallel
Strand 3
A
531 541anti-parallel
Strand 4
A
546 553anti-parallel
Strand 5
A
558 562anti-parallel
Strand 6
A
602 603anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 600first strand
Strand 2
A
641 644anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 81first strand
Strand 2
C
307 314anti-parallel
Strand 3
C
118 125anti-parallel
Strand 4
C
269 276anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 109first strand
Strand 2
C
290 296anti-parallel
Strand 3
C
182 188anti-parallel
Strand 4
C
194 196anti-parallel
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