Analysis of interatomic Contacts of Structural Units in PDB entry:
7VSS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VSS entry

There is 1 chain in PDB entry 7VSS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 544
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 7VSS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 30Right-handed alpha
Helix 2
AA2
A
32 43Right-handed alpha
Helix 3
AA3
A
62 78Right-handed alpha
Helix 4
AA4
A
91 102Right-handed alpha
Helix 5
AA5
A
136 148Right-handed alpha
Helix 6
AA6
A
182 193Right-handed alpha
Helix 7
AA7
A
194 205Right-handed alpha
Helix 8
AA8
A
219 227Right-handed alpha
Helix 9
AA9
A
258 266Right-handed alpha
Helix 10
AB1
A
294 306Right-handed alpha
Helix 11
AB2
A
307 313Right-handed 310
Helix 12
AB3
A
327 337Right-handed alpha
Helix 13
AB4
A
349 356Right-handed alpha
Helix 14
AB5
A
378 394Right-handed alpha
Helix 15
AB6
A
396 409Right-handed alpha
Helix 16
AB7
A
422 441Right-handed alpha
Helix 17
AB8
A
506 510Right-handed 310
Helix 18
AB9
A
513 518Right-handed alpha
Helix 19
AC1
A
518 530Right-handed alpha
Helix 20
AC2
A
530 536Right-handed alpha
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There are 6 sheets in PDB entry 7VSS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
152 157anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
122 128anti-parallel
Strand 3
A
106 110anti-parallel
Strand 4
A
52 57parallel
Strand 5
A
81 89parallel
Strand 6
A
174 179parallel
Strand 7
A
167 171anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 211first strand
Strand 2
A
290 292parallel
Strand 3
A
255 257parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 343first strand
Strand 2
A
318 322parallel
Strand 3
A
361 364parallel
Strand 4
A
368 371anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
448 455anti-parallel
Strand 3
A
472 476anti-parallel
Strand 4
A
481 487anti-parallel
Strand 5
A
494 504anti-parallel
Strand 6
A
410 421anti-parallel
Strand 7
A
542 544anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 459first strand
Strand 2
A
466 467anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il