Analysis of interatomic Contacts of Structural Units in PDB entry:
7VST

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VST entry

There are 2 chains in PDB entry 7VST (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 544
B	MET 1	THR 544

There are 40 helices in PDB entry 7VST. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	30	Right-handed alpha
Helix 2	AA2	A	32	43	Right-handed alpha
Helix 3	AA3	A	62	78	Right-handed alpha
Helix 4	AA4	A	91	103	Right-handed alpha
Helix 5	AA5	A	136	148	Right-handed alpha
Helix 6	AA6	A	182	193	Right-handed alpha
Helix 7	AA7	A	194	205	Right-handed alpha
Helix 8	AA8	A	219	227	Right-handed alpha
Helix 9	AA9	A	258	264	Right-handed alpha
Helix 10	AB1	A	294	305	Right-handed alpha
Helix 11	AB2	A	306	313	Right-handed 310
Helix 12	AB3	A	327	337	Right-handed alpha
Helix 13	AB4	A	349	356	Right-handed alpha
Helix 14	AB5	A	378	394	Right-handed alpha
Helix 15	AB6	A	396	409	Right-handed alpha
Helix 16	AB7	A	423	441	Right-handed alpha
Helix 17	AB8	A	506	510	Right-handed 310
Helix 18	AB9	A	513	518	Right-handed alpha
Helix 19	AC1	A	518	530	Right-handed alpha
Helix 20	AC2	A	530	536	Right-handed alpha
Helix 21	AC3	B	25	29	Right-handed alpha
Helix 22	AC4	B	32	43	Right-handed alpha
Helix 23	AC5	B	62	78	Right-handed alpha
Helix 24	AC6	B	91	103	Right-handed alpha
Helix 25	AC7	B	136	148	Right-handed alpha
Helix 26	AC8	B	182	193	Right-handed alpha
Helix 27	AC9	B	194	205	Right-handed alpha
Helix 28	AD1	B	218	227	Right-handed alpha
Helix 29	AD2	B	258	264	Right-handed alpha
Helix 30	AD3	B	294	305	Right-handed alpha
Helix 31	AD4	B	306	313	Right-handed 310
Helix 32	AD5	B	327	337	Right-handed alpha
Helix 33	AD6	B	347	356	Right-handed alpha
Helix 34	AD7	B	378	394	Right-handed alpha
Helix 35	AD8	B	396	409	Right-handed alpha
Helix 36	AD9	B	423	441	Right-handed alpha
Helix 37	AE1	B	506	510	Right-handed 310
Helix 38	AE2	B	513	518	Right-handed alpha
Helix 39	AE3	B	518	530	Right-handed alpha
Helix 40	AE4	B	530	536	Right-handed alpha

There are 12 sheets in PDB entry 7VST. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	A	152	157	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	122	128	anti-parallel
Strand 3	A	106	110	anti-parallel
Strand 4	A	52	57	parallel
Strand 5	A	81	89	parallel
Strand 6	A	174	179	parallel
Strand 7	A	167	171	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	211	first strand
Strand 2	A	290	292	parallel
Strand 3	A	256	257	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	343	first strand
Strand 2	A	318	322	parallel
Strand 3	A	361	364	parallel
Strand 4	A	368	371	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	444	445	first strand
Strand 2	A	448	455	anti-parallel
Strand 3	A	472	476	anti-parallel
Strand 4	A	481	487	anti-parallel
Strand 5	A	493	504	anti-parallel
Strand 6	A	410	422	anti-parallel
Strand 7	A	542	543	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	458	459	first strand
Strand 2	A	466	467	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	7	first strand
Strand 2	B	152	157	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	24	first strand
Strand 2	B	122	128	anti-parallel
Strand 3	B	106	110	anti-parallel
Strand 4	B	52	57	parallel
Strand 5	B	81	89	parallel
Strand 6	B	174	179	parallel
Strand 7	B	167	171	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	211	first strand
Strand 2	B	290	292	parallel
Strand 3	B	255	257	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	343	first strand
Strand 2	B	318	322	parallel
Strand 3	B	361	364	parallel
Strand 4	B	368	371	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	445	first strand
Strand 2	B	448	455	anti-parallel
Strand 3	B	472	476	anti-parallel
Strand 4	B	481	487	anti-parallel
Strand 5	B	493	504	anti-parallel
Strand 6	B	410	422	anti-parallel
Strand 7	B	542	543	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	458	459	first strand
Strand 2	B	466	467	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VST

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VST