Analysis of interatomic Contacts of Structural Units in PDB entry:
7VSW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VSW entry

There are 8 chains in PDB entry 7VSW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	SER 211
B	GLN 1	LYS 226
E	ASP 1	SER 211
F	GLN 1	SER 223
I	ASP 1	SER 211
J	GLN 1	SER 223
M	ASP 1	SER 211
N	GLN 1	SER 223

There are 37 helices in PDB entry 7VSW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	79	83	Right-handed 310
Helix 2	AA2	A	121	127	Right-handed 310
Helix 3	AA3	A	181	186	Right-handed alpha
Helix 4	AA4	A	199	203	Right-handed 310
Helix 5	AA5	B	63	66	Right-handed 310
Helix 6	AA6	B	75	77	Right-handed 310
Helix 7	AA7	B	88	92	Right-handed 310
Helix 8	AA8	B	133	139	Right-handed 310
Helix 9	AA9	B	193	198	Right-handed alpha
Helix 10	AB1	B	211	215	Right-handed 310
Helix 11	AB2	E	79	83	Right-handed 310
Helix 12	AB3	E	121	127	Right-handed 310
Helix 13	AB4	E	181	186	Right-handed alpha
Helix 14	AB5	E	199	203	Right-handed 310
Helix 15	AB6	F	63	66	Right-handed 310
Helix 16	AB7	F	88	92	Right-handed 310
Helix 17	AB8	F	133	139	Right-handed 310
Helix 18	AB9	F	193	198	Right-handed alpha
Helix 19	AC1	F	211	215	Right-handed 310
Helix 20	AC2	I	79	83	Right-handed 310
Helix 21	AC3	I	121	127	Right-handed 310
Helix 22	AC4	I	181	186	Right-handed alpha
Helix 23	AC5	I	199	203	Right-handed 310
Helix 24	AC6	J	75	77	Right-handed 310
Helix 25	AC7	J	88	92	Right-handed 310
Helix 26	AC8	J	133	139	Right-handed 310
Helix 27	AC9	J	193	198	Right-handed alpha
Helix 28	AD1	J	211	215	Right-handed 310
Helix 29	AD2	M	79	83	Right-handed 310
Helix 30	AD3	M	121	127	Right-handed 310
Helix 31	AD4	M	181	186	Right-handed alpha
Helix 32	AD5	M	199	203	Right-handed 310
Helix 33	AD6	N	63	66	Right-handed 310
Helix 34	AD7	N	88	92	Right-handed 310
Helix 35	AD8	N	133	139	Right-handed 310
Helix 36	AD9	N	193	198	Right-handed alpha
Helix 37	AE1	N	211	215	Right-handed 310

There are 44 sheets in PDB entry 7VSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	70	75	anti-parallel
Strand 4	A	62	67	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	13	first strand
Strand 2	A	102	106	parallel
Strand 3	A	84	90	anti-parallel
Strand 4	A	33	38	anti-parallel
Strand 5	A	44	49	anti-parallel
Strand 6	A	53	54	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	129	139	anti-parallel
Strand 3	A	171	180	anti-parallel
Strand 4	A	158	160	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	129	139	anti-parallel
Strand 3	A	171	180	anti-parallel
Strand 4	A	164	165	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	145	150	anti-parallel
Strand 3	A	190	195	anti-parallel
Strand 4	A	204	208	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	7	first strand
Strand 2	B	18	25	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	69	74	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	35	41	anti-parallel
Strand 5	B	48	53	anti-parallel
Strand 6	B	59	61	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	113	117	parallel
Strand 3	B	93	100	anti-parallel
Strand 4	B	108	109	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	130	first strand
Strand 2	B	141	151	anti-parallel
Strand 3	B	183	192	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	130	first strand
Strand 2	B	141	151	anti-parallel
Strand 3	B	183	192	anti-parallel
Strand 4	B	176	177	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	167	first strand
Strand 2	B	157	162	anti-parallel
Strand 3	B	201	207	anti-parallel
Strand 4	B	216	221	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	102	106	parallel
Strand 3	E	84	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	129	139	anti-parallel
Strand 3	E	171	180	anti-parallel
Strand 4	E	158	160	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	129	139	anti-parallel
Strand 3	E	171	180	anti-parallel
Strand 4	E	164	165	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	154	first strand
Strand 2	E	145	150	anti-parallel
Strand 3	E	190	195	anti-parallel
Strand 4	E	204	208	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	79	84	anti-parallel
Strand 4	F	69	74	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	93	100	anti-parallel
Strand 4	F	35	41	anti-parallel
Strand 5	F	48	53	anti-parallel
Strand 6	F	59	61	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	93	100	anti-parallel
Strand 4	F	108	109	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	130	first strand
Strand 2	F	141	151	anti-parallel
Strand 3	F	183	192	anti-parallel
Strand 4	F	170	172	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	126	130	first strand
Strand 2	F	141	151	anti-parallel
Strand 3	F	183	192	anti-parallel
Strand 4	F	176	177	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	165	166	first strand
Strand 2	F	157	162	anti-parallel
Strand 3	F	202	207	anti-parallel
Strand 4	F	216	220	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	84	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel
Strand 6	I	53	54	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	114	118	first strand
Strand 2	I	129	139	anti-parallel
Strand 3	I	171	180	anti-parallel
Strand 4	I	158	160	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	114	118	first strand
Strand 2	I	129	139	anti-parallel
Strand 3	I	171	180	anti-parallel
Strand 4	I	164	165	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	153	155	first strand
Strand 2	I	145	150	anti-parallel
Strand 3	I	190	195	anti-parallel
Strand 4	I	204	208	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	79	84	anti-parallel
Strand 4	J	69	74	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	113	117	parallel
Strand 3	J	93	100	anti-parallel
Strand 4	J	35	41	anti-parallel
Strand 5	J	48	53	anti-parallel
Strand 6	J	59	61	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	113	117	parallel
Strand 3	J	93	100	anti-parallel
Strand 4	J	108	109	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	126	130	first strand
Strand 2	J	141	151	anti-parallel
Strand 3	J	183	192	anti-parallel
Strand 4	J	170	172	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	126	130	first strand
Strand 2	J	141	151	anti-parallel
Strand 3	J	183	192	anti-parallel
Strand 4	J	176	177	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	165	166	first strand
Strand 2	J	157	162	anti-parallel
Strand 3	J	202	207	anti-parallel
Strand 4	J	216	220	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	84	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	53	54	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	114	118	first strand
Strand 2	M	129	139	anti-parallel
Strand 3	M	171	180	anti-parallel
Strand 4	M	158	160	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	114	118	first strand
Strand 2	M	129	139	anti-parallel
Strand 3	M	171	180	anti-parallel
Strand 4	M	164	165	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	153	155	first strand
Strand 2	M	145	150	anti-parallel
Strand 3	M	190	195	anti-parallel
Strand 4	M	204	208	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	79	84	anti-parallel
Strand 4	N	69	74	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	113	117	parallel
Strand 3	N	93	100	anti-parallel
Strand 4	N	35	41	anti-parallel
Strand 5	N	48	53	anti-parallel
Strand 6	N	59	61	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	113	117	parallel
Strand 3	N	93	100	anti-parallel
Strand 4	N	108	109	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	126	130	first strand
Strand 2	N	141	151	anti-parallel
Strand 3	N	183	192	anti-parallel
Strand 4	N	170	172	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	126	130	first strand
Strand 2	N	141	151	anti-parallel
Strand 3	N	183	192	anti-parallel
Strand 4	N	176	177	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	165	167	first strand
Strand 2	N	157	162	anti-parallel
Strand 3	N	202	207	anti-parallel
Strand 4	N	216	220	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VSW

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VSW