Analysis of interatomic Contacts of Structural Units in PDB entry:
7VT1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VT1 entry

There are 2 chains in PDB entry 7VT1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASP 437
B
 ALA 1THR 440
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 7VT1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 39Right-handed alpha
Helix 2
AA2
A
42 53Right-handed alpha
Helix 3
AA3
A
67 80Right-handed alpha
Helix 4
AA4
A
113 120Right-handed alpha
Helix 5
AA5
A
120 136Right-handed alpha
Helix 6
AA6
A
141 147Right-handed alpha
Helix 7
AA7
A
157 179Right-handed alpha
Helix 8
AA8
A
191 201Right-handed alpha
Helix 9
AA9
A
204 223Right-handed alpha
Helix 10
AB1
A
235 244Right-handed alpha
Helix 11
AB2
A
245 247Right-handed 310
Helix 12
AB3
A
269 283Right-handed alpha
Helix 13
AB4
A
298 303Right-handed 310
Helix 14
AB5
A
304 312Right-handed alpha
Helix 15
AB6
A
339 349Right-handed alpha
Helix 16
AB7
A
353 364Right-handed alpha
Helix 17
AB8
A
377 388Right-handed alpha
Helix 18
AB9
A
404 418Right-handed alpha
Helix 19
AC1
A
423 428Right-handed 310
Helix 20
AC2
B
20 38Right-handed alpha
Helix 21
AC3
B
42 54Right-handed alpha
Helix 22
AC4
B
67 80Right-handed alpha
Helix 23
AC5
B
113 120Right-handed alpha
Helix 24
AC6
B
120 138Right-handed alpha
Helix 25
AC7
B
141 147Right-handed alpha
Helix 26
AC8
B
157 179Right-handed alpha
Helix 27
AC9
B
191 201Right-handed alpha
Helix 28
AD1
B
204 223Right-handed alpha
Helix 29
AD2
B
235 244Right-handed alpha
Helix 30
AD3
B
245 248Right-handed 310
Helix 31
AD4
B
269 283Right-handed alpha
Helix 32
AD5
B
298 303Right-handed 310
Helix 33
AD6
B
304 312Right-handed alpha
Helix 34
AD7
B
339 349Right-handed alpha
Helix 35
AD8
B
352 363Right-handed alpha
Helix 36
AD9
B
377 389Right-handed alpha
Helix 37
AE1
B
404 418Right-handed alpha
Helix 38
AE2
B
423 429Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 7VT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 18first strand
Strand 2
A
59 65anti-parallel
Strand 3
A
87 91anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
324 325anti-parallel
Strand 3
A
185 188parallel
Strand 4
A
98 102parallel
Strand 5
A
367 370parallel
Strand 6
A
393 395parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
228 232anti-parallel
Strand 3
A
263 268anti-parallel
Strand 4
A
253 260anti-parallel
Strand 5
A
351 352parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 18first strand
Strand 2
B
59 65anti-parallel
Strand 3
B
87 91anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 333first strand
Strand 2
B
324 325anti-parallel
Strand 3
B
185 188parallel
Strand 4
B
98 102parallel
Strand 5
B
367 370parallel
Strand 6
B
393 396parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
253 260first strand
Strand 2
B
263 268anti-parallel
Strand 3
B
228 232anti-parallel
Strand 4
B
287 289anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il