Analysis of interatomic Contacts of Structural Units in PDB entry:
7VT8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VT8 entry

There is 1 chain in PDB entry 7VT8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 17GLU 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7VT8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 26Right-handed alpha
Helix 2
AA2
A
48 59Right-handed alpha
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
82 99Right-handed alpha
Helix 5
AA5
A
110 116Right-handed alpha
Helix 6
AA6
A
116 135Right-handed alpha
Helix 7
AA7
A
152 157Right-handed alpha
Helix 8
AA8
A
157 174Right-handed alpha
Helix 9
AA9
A
185 190Right-handed alpha
Helix 10
AB1
A
191 197Right-handed 310
Helix 11
AB2
A
214 219Right-handed alpha
Helix 12
AB3
A
323 325Right-handed 310
Helix 13
AB4
A
367 386Right-handed alpha
Helix 14
AB5
A
401 419Right-handed alpha
Helix 15
AB6
A
443 451Right-handed alpha
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There are 6 sheets in PDB entry 7VT8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
62 65parallel
Strand 3
A
102 106parallel
Strand 4
A
142 145parallel
Strand 5
A
181 183parallel
Strand 6
A
205 211parallel
Strand 7
A
389 394parallel
Strand 8
A
422 425parallel
Strand 9
A
27 30parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
364 366anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
272 281anti-parallel
Strand 3
A
331 338anti-parallel
Strand 4
A
296 300anti-parallel
Strand 5
A
308 311anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 257first strand
Strand 2
A
262 266anti-parallel
Strand 3
A
347 355anti-parallel
Strand 4
A
286 291anti-parallel
Strand 5
A
316 321anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 257first strand
Strand 2
A
262 266anti-parallel
Strand 3
A
347 355anti-parallel
Strand 4
A
361 362anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
435 436first strand
Strand 2
A
441 442anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il