Analysis of interatomic Contacts of Structural Units in PDB entry:
7VT9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VT9 entry

There are 2 chains in PDB entry 7VT9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 604
B	MET 1	THR 27

There are 40 helices in PDB entry 7VT9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	140	144	Right-handed 310
Helix 2	AA2	A	178	183	Right-handed alpha
Helix 3	AA3	A	185	193	Right-handed alpha
Helix 4	AA4	A	225	239	Right-handed alpha
Helix 5	AA5	A	291	295	Right-handed 310
Helix 6	AA6	A	305	313	Right-handed alpha
Helix 7	AA7	A	318	323	Right-handed alpha
Helix 8	AA8	A	349	365	Right-handed alpha
Helix 9	AA9	A	378	384	Right-handed alpha
Helix 10	AB1	A	396	404	Right-handed alpha
Helix 11	AB2	A	417	431	Right-handed alpha
Helix 12	AB3	A	433	438	Right-handed alpha
Helix 13	AB4	A	451	457	Right-handed alpha
Helix 14	AB5	A	458	461	Right-handed 310
Helix 15	AB6	A	462	473	Right-handed alpha
Helix 16	AB7	A	507	524	Right-handed alpha
Helix 17	AB8	A	525	530	Right-handed alpha
Helix 18	AB9	A	570	574	Right-handed 310
Helix 19	AC1	B	103	107	Right-handed 310
Helix 20	AC2	B	118	123	Right-handed alpha
Helix 21	AC3	B	129	133	Right-handed 310
Helix 22	AC4	B	178	185	Right-handed alpha
Helix 23	AC5	B	185	193	Right-handed alpha
Helix 24	AC6	B	225	240	Right-handed alpha
Helix 25	AC7	B	277	281	Right-handed 310
Helix 26	AC8	B	291	295	Right-handed 310
Helix 27	AC9	B	305	313	Right-handed alpha
Helix 28	AD1	B	318	323	Right-handed alpha
Helix 29	AD2	B	337	341	Right-handed 310
Helix 30	AD3	B	349	365	Right-handed alpha
Helix 31	AD4	B	378	385	Right-handed alpha
Helix 32	AD5	B	396	404	Right-handed alpha
Helix 33	AD6	B	417	431	Right-handed alpha
Helix 34	AD7	B	433	438	Right-handed alpha
Helix 35	AD8	B	451	456	Right-handed alpha
Helix 36	AD9	B	457	461	Right-handed 310
Helix 37	AE1	B	462	473	Right-handed alpha
Helix 38	AE2	B	482	486	Right-handed 310
Helix 39	AE3	B	507	524	Right-handed alpha
Helix 40	AE4	B	525	530	Right-handed alpha

There are 16 sheets in PDB entry 7VT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	5	first strand
Strand 2	A	19	27	anti-parallel
Strand 3	A	62	69	anti-parallel
Strand 4	A	51	52	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	34	41	anti-parallel
Strand 3	A	48	49	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	34	41	anti-parallel
Strand 3	A	79	84	anti-parallel
Strand 4	A	89	93	anti-parallel
Strand 5	A	96	98	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	389	390	first strand
Strand 2	A	369	372	parallel
Strand 3	A	332	335	parallel
Strand 4	A	243	247	parallel
Strand 5	A	196	199	parallel
Strand 6	A	125	128	parallel
Strand 7	A	476	480	parallel
Strand 8	A	441	442	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	173	174	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	538	first strand
Strand 2	A	541	547	anti-parallel
Strand 3	A	552	558	anti-parallel
Strand 4	A	599	601	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	566	first strand
Strand 2	A	591	594	anti-parallel
Strand 3	A	586	588	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	19	27	anti-parallel
Strand 3	B	14	15	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	19	27	anti-parallel
Strand 3	B	62	69	anti-parallel
Strand 4	B	51	52	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	34	39	anti-parallel
Strand 3	B	76	84	anti-parallel
Strand 4	B	89	93	anti-parallel
Strand 5	B	96	98	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	34	39	anti-parallel
Strand 3	B	76	84	anti-parallel
Strand 4	B	108	111	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	389	390	first strand
Strand 2	B	369	372	parallel
Strand 3	B	332	335	parallel
Strand 4	B	242	246	parallel
Strand 5	B	196	199	parallel
Strand 6	B	125	128	parallel
Strand 7	B	476	480	parallel
Strand 8	B	441	442	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	173	174	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	215	219	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	538	first strand
Strand 2	B	541	548	anti-parallel
Strand 3	B	551	558	anti-parallel
Strand 4	B	598	601	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	566	first strand
Strand 2	B	591	594	anti-parallel
Strand 3	B	586	588	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VT9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VT9