Analysis of interatomic Contacts of Structural Units in PDB entry:
7VTF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VTF entry

There are 4 chains in PDB entry 7VTF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	ALA 309
B	LYS 4	ALA 309
C	LYS 4	ALA 309
D	LYS 4	ALA 309

There are 49 helices in PDB entry 7VTF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	54	Right-handed alpha
Helix 2	AA2	A	66	78	Right-handed alpha
Helix 3	AA3	A	114	120	Right-handed 310
Helix 4	AA4	A	121	127	Right-handed alpha
Helix 5	AA5	A	128	134	Right-handed alpha
Helix 6	AA6	A	145	155	Right-handed alpha
Helix 7	AA7	A	170	181	Right-handed 310
Helix 8	AA8	A	187	196	Right-handed alpha
Helix 9	AA9	A	204	215	Right-handed alpha
Helix 10	AB1	A	253	268	Right-handed alpha
Helix 11	AB2	A	271	288	Right-handed alpha
Helix 12	AB3	A	298	308	Right-handed alpha
Helix 13	AB4	B	41	53	Right-handed alpha
Helix 14	AB5	B	66	78	Right-handed alpha
Helix 15	AB6	B	114	120	Right-handed 310
Helix 16	AB7	B	121	127	Right-handed alpha
Helix 17	AB8	B	128	134	Right-handed alpha
Helix 18	AB9	B	145	155	Right-handed alpha
Helix 19	AC1	B	170	181	Right-handed 310
Helix 20	AC2	B	187	196	Right-handed alpha
Helix 21	AC3	B	204	215	Right-handed alpha
Helix 22	AC4	B	253	268	Right-handed alpha
Helix 23	AC5	B	271	288	Right-handed alpha
Helix 24	AC6	B	298	308	Right-handed alpha
Helix 25	AC7	C	41	53	Right-handed alpha
Helix 26	AC8	C	66	78	Right-handed alpha
Helix 27	AC9	C	114	120	Right-handed 310
Helix 28	AD1	C	121	127	Right-handed alpha
Helix 29	AD2	C	128	134	Right-handed alpha
Helix 30	AD3	C	145	155	Right-handed alpha
Helix 31	AD4	C	170	181	Right-handed 310
Helix 32	AD5	C	187	196	Right-handed alpha
Helix 33	AD6	C	204	215	Right-handed alpha
Helix 34	AD7	C	253	268	Right-handed alpha
Helix 35	AD8	C	271	288	Right-handed alpha
Helix 36	AD9	C	298	308	Right-handed alpha
Helix 37	AE1	D	41	54	Right-handed alpha
Helix 38	AE2	D	66	78	Right-handed alpha
Helix 39	AE3	D	114	120	Right-handed 310
Helix 40	AE4	D	121	127	Right-handed alpha
Helix 41	AE5	D	128	134	Right-handed alpha
Helix 42	AE6	D	145	155	Right-handed alpha
Helix 43	AE7	D	170	181	Right-handed 310
Helix 44	AE8	D	187	196	Right-handed alpha
Helix 45	AE9	D	204	215	Right-handed alpha
Helix 46	AF1	D	225	227	Right-handed 310
Helix 47	AF2	D	253	268	Right-handed alpha
Helix 48	AF3	D	271	288	Right-handed alpha
Helix 49	AF4	D	298	308	Right-handed alpha

There are 10 sheets in PDB entry 7VTF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	60	first strand
Strand 2	A	6	10	parallel
Strand 3	A	137	141	parallel
Strand 4	A	161	164	parallel
Strand 5	A	183	184	parallel
Strand 6	A	219	223	parallel
Strand 7	A	229	233	anti-parallel
Strand 8	A	238	241	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	21	first strand
Strand 2	A	30	40	anti-parallel
Strand 3	B	109	113	parallel
Strand 4	B	96	101	anti-parallel
Strand 5	B	14	21	parallel
Strand 6	B	30	40	anti-parallel
Strand 7	A	109	113	parallel
Strand 8	A	96	101	anti-parallel
Strand 9	A	14	21	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	87	89	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	60	first strand
Strand 2	B	6	10	parallel
Strand 3	B	137	141	parallel
Strand 4	B	161	164	parallel
Strand 5	B	183	184	parallel
Strand 6	B	219	223	parallel
Strand 7	B	229	233	anti-parallel
Strand 8	B	238	241	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	87	89	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	60	first strand
Strand 2	C	6	10	parallel
Strand 3	C	138	141	parallel
Strand 4	C	161	164	parallel
Strand 5	C	183	184	parallel
Strand 6	C	219	223	parallel
Strand 7	C	229	233	anti-parallel
Strand 8	C	238	241	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	21	first strand
Strand 2	C	30	40	anti-parallel
Strand 3	D	109	113	parallel
Strand 4	D	96	101	anti-parallel
Strand 5	D	14	21	parallel
Strand 6	D	30	40	anti-parallel
Strand 7	C	109	113	parallel
Strand 8	C	96	101	anti-parallel
Strand 9	C	14	21	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	87	89	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	60	first strand
Strand 2	D	6	10	parallel
Strand 3	D	137	141	parallel
Strand 4	D	161	164	parallel
Strand 5	D	183	184	parallel
Strand 6	D	219	223	parallel
Strand 7	D	229	233	anti-parallel
Strand 8	D	238	241	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	87	89	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VTF

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VTF