Analysis of interatomic Contacts of Structural Units in PDB entry:
7VTG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VTG entry

There are 4 chains in PDB entry 7VTG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	ASN 308
B	GLU 3	ALA 309
C	LYS 4	ASN 308
D	GLU 3	GLU 307

There are 57 helices in PDB entry 7VTG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	53	Right-handed alpha
Helix 2	AA2	A	67	79	Right-handed alpha
Helix 3	AA3	A	114	120	Right-handed 310
Helix 4	AA4	A	121	127	Right-handed alpha
Helix 5	AA5	A	128	134	Right-handed alpha
Helix 6	AA6	A	145	155	Right-handed alpha
Helix 7	AA7	A	169	181	Right-handed 310
Helix 8	AA8	A	187	196	Right-handed alpha
Helix 9	AA9	A	201	203	Right-handed 310
Helix 10	AB1	A	204	215	Right-handed alpha
Helix 11	AB2	A	225	227	Right-handed 310
Helix 12	AB3	A	253	268	Right-handed alpha
Helix 13	AB4	A	271	288	Right-handed alpha
Helix 14	AB5	A	298	308	Right-handed alpha
Helix 15	AB6	B	41	53	Right-handed alpha
Helix 16	AB7	B	67	79	Right-handed alpha
Helix 17	AB8	B	114	120	Right-handed 310
Helix 18	AB9	B	121	128	Right-handed alpha
Helix 19	AC1	B	128	134	Right-handed alpha
Helix 20	AC2	B	145	155	Right-handed alpha
Helix 21	AC3	B	167	172	Right-handed alpha
Helix 22	AC4	B	173	181	Right-handed 310
Helix 23	AC5	B	187	196	Right-handed alpha
Helix 24	AC6	B	201	203	Right-handed 310
Helix 25	AC7	B	204	215	Right-handed alpha
Helix 26	AC8	B	225	227	Right-handed 310
Helix 27	AC9	B	253	268	Right-handed alpha
Helix 28	AD1	B	271	288	Right-handed alpha
Helix 29	AD2	B	298	308	Right-handed alpha
Helix 30	AD3	C	41	53	Right-handed alpha
Helix 31	AD4	C	67	79	Right-handed alpha
Helix 32	AD5	C	114	120	Right-handed 310
Helix 33	AD6	C	121	127	Right-handed alpha
Helix 34	AD7	C	128	134	Right-handed alpha
Helix 35	AD8	C	145	155	Right-handed alpha
Helix 36	AD9	C	169	181	Right-handed 310
Helix 37	AE1	C	187	196	Right-handed alpha
Helix 38	AE2	C	201	203	Right-handed 310
Helix 39	AE3	C	204	215	Right-handed alpha
Helix 40	AE4	C	225	227	Right-handed 310
Helix 41	AE5	C	253	268	Right-handed alpha
Helix 42	AE6	C	271	288	Right-handed alpha
Helix 43	AE7	C	298	308	Right-handed alpha
Helix 44	AE8	D	41	53	Right-handed alpha
Helix 45	AE9	D	67	79	Right-handed alpha
Helix 46	AF1	D	114	120	Right-handed 310
Helix 47	AF2	D	121	127	Right-handed alpha
Helix 48	AF3	D	128	134	Right-handed alpha
Helix 49	AF4	D	145	155	Right-handed alpha
Helix 50	AF5	D	169	181	Right-handed 310
Helix 51	AF6	D	187	196	Right-handed alpha
Helix 52	AF7	D	201	203	Right-handed 310
Helix 53	AF8	D	204	215	Right-handed alpha
Helix 54	AF9	D	225	227	Right-handed 310
Helix 55	AG1	D	253	268	Right-handed alpha
Helix 56	AG2	D	271	288	Right-handed alpha
Helix 57	AG3	D	298	307	Right-handed alpha

There are 10 sheets in PDB entry 7VTG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	7	10	parallel
Strand 3	A	137	141	parallel
Strand 4	A	161	164	parallel
Strand 5	A	183	184	parallel
Strand 6	A	219	223	parallel
Strand 7	A	229	233	anti-parallel
Strand 8	A	238	241	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	21	first strand
Strand 2	A	30	40	anti-parallel
Strand 3	B	109	113	parallel
Strand 4	B	96	101	anti-parallel
Strand 5	B	14	21	parallel
Strand 6	B	30	40	anti-parallel
Strand 7	A	109	113	parallel
Strand 8	A	96	101	anti-parallel
Strand 9	A	14	21	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	87	89	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	60	first strand
Strand 2	B	7	10	parallel
Strand 3	B	137	141	parallel
Strand 4	B	161	164	parallel
Strand 5	B	183	184	parallel
Strand 6	B	219	223	parallel
Strand 7	B	229	233	anti-parallel
Strand 8	B	238	241	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	87	89	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	7	10	parallel
Strand 3	C	137	141	parallel
Strand 4	C	161	164	parallel
Strand 5	C	183	184	parallel
Strand 6	C	219	223	parallel
Strand 7	C	229	233	anti-parallel
Strand 8	C	238	241	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	21	first strand
Strand 2	C	30	40	anti-parallel
Strand 3	D	109	113	parallel
Strand 4	D	96	101	anti-parallel
Strand 5	D	14	21	parallel
Strand 6	D	31	40	anti-parallel
Strand 7	C	109	113	parallel
Strand 8	C	96	101	anti-parallel
Strand 9	C	14	21	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	87	89	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	7	10	parallel
Strand 3	D	137	141	parallel
Strand 4	D	161	164	parallel
Strand 5	D	183	184	parallel
Strand 6	D	219	223	parallel
Strand 7	D	229	233	anti-parallel
Strand 8	D	238	241	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	87	89	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VTG

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VTG