Analysis of interatomic Contacts of Structural Units in PDB entry:
7VTK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VTK entry

There is 1 chain in PDB entry 7VTK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 7VTK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
160 177Right-handed alpha
Helix 2
AA2
A
178 182Right-handed 310
Helix 3
AA3
A
197 203Right-handed alpha
Helix 4
AA4
A
204 206Right-handed 310
Helix 5
AA5
A
208 212Right-handed 310
Helix 6
AA6
A
218 232Right-handed alpha
Helix 7
AA7
A
266 273Right-handed alpha
Helix 8
AA8
A
275 279Right-handed 310
Helix 9
AA9
A
285 301Right-handed alpha
Helix 10
AB1
A
315 319Right-handed 310
Helix 11
AB2
A
326 335Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7VTK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
3 9anti-parallel
Strand 3
A
366 371parallel
Strand 4
A
142 147anti-parallel
Strand 5
A
151 154anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
30 33anti-parallel
Strand 3
A
16 24anti-parallel
Strand 4
A
58 59anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
30 33anti-parallel
Strand 3
A
16 24anti-parallel
Strand 4
A
75 84anti-parallel
Strand 5
A
115 122anti-parallel
Strand 6
A
127 130anti-parallel
Strand 7
A
358 361anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
91 93anti-parallel
Strand 3
A
97 99anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
192 196anti-parallel
Strand 3
A
184 186anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 263first strand
Strand 2
A
253 256anti-parallel
Strand 3
A
244 250anti-parallel
Strand 4
A
234 237anti-parallel
Strand 5
A
309 310parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il