Analysis of interatomic Contacts of Structural Units in PDB entry:
7VTN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VTN entry

There are 3 chains in PDB entry 7VTN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 14LYS 775
B
 G -19 C 36
C
 A 1 C 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 7VTN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 19Right-handed 310
Helix 2
AA2
A
20 23Right-handed 310
Helix 3
AA3
A
24 41Right-handed alpha
Helix 4
AA4
A
43 51Right-handed alpha
Helix 5
AA5
A
52 56Right-handed 310
Helix 6
AA6
A
62 72Right-handed alpha
Helix 7
AA7
A
72 89Right-handed alpha
Helix 8
AA8
A
93 98Right-handed 310
Helix 9
AA9
A
103 123Right-handed alpha
Helix 10
AB1
A
141 151Right-handed alpha
Helix 11
AB2
A
154 166Right-handed alpha
Helix 12
AB3
A
171 183Right-handed alpha
Helix 13
AB4
A
197 212Right-handed alpha
Helix 14
AB5
A
214 221Right-handed alpha
Helix 15
AB6
A
245 258Right-handed alpha
Helix 16
AB7
A
325 337Right-handed alpha
Helix 17
AB8
A
339 359Right-handed alpha
Helix 18
AB9
A
365 372Right-handed 310
Helix 19
AC1
A
373 380Right-handed alpha
Helix 20
AC2
A
386 409Right-handed alpha
Helix 21
AC3
A
410 412Right-handed 310
Helix 22
AC4
A
413 428Right-handed alpha
Helix 23
AC5
A
434 447Right-handed alpha
Helix 24
AC6
A
449 463Right-handed alpha
Helix 25
AC7
A
467 474Right-handed alpha
Helix 26
AC8
A
479 496Right-handed alpha
Helix 27
AC9
A
500 507Right-handed alpha
Helix 28
AD1
A
516 526Right-handed alpha
Helix 29
AD2
A
533 541Right-handed alpha
Helix 30
AD3
A
546 558Right-handed alpha
Helix 31
AD4
A
567 572Right-handed 310
Helix 32
AD5
A
582 610Right-handed alpha
Helix 33
AD6
A
651 663Right-handed alpha
Helix 34
AD7
A
672 679Right-handed alpha
Helix 35
AD8
A
679 702Right-handed alpha
Helix 36
AD9
A
731 745Right-handed alpha
Helix 37
AE1
A
750 763Right-handed alpha
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There are 4 sheets in PDB entry 7VTN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
139 140anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
307 314anti-parallel
Strand 3
A
317 324anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 267first strand
Strand 2
A
289 291anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
616 617first strand
Strand 2
A
622 624anti-parallel
Strand 3
A
636 638anti-parallel
Strand 4
A
670 671parallel
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