Analysis of interatomic Contacts of Structural Units in PDB entry:
7VU1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VU1 entry

There are 2 chains in PDB entry 7VU1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2PHE 436
B
 GLY 2PHE 436
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 7VU1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 53Right-handed 310
Helix 2
AA2
A
86 90Right-handed 310
Helix 3
AA3
A
151 153Right-handed 310
Helix 4
AA4
A
334 337Right-handed 310
Helix 5
AA5
B
50 53Right-handed 310
Helix 6
AA6
B
86 90Right-handed 310
Helix 7
AA7
B
151 153Right-handed 310
Helix 8
AA8
B
334 337Right-handed 310
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There are 8 sheets in PDB entry 7VU1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 23first strand
Strand 2
A
31 47anti-parallel
Strand 3
A
55 69anti-parallel
Strand 4
A
98 110anti-parallel
Strand 5
A
113 120anti-parallel
Strand 6
A
138 149anti-parallel
Strand 7
A
155 167anti-parallel
Strand 8
A
189 197anti-parallel
Strand 9
A
203 211anti-parallel
Strand 10
A
215 228anti-parallel
Strand 11
A
231 244anti-parallel
Strand 12
A
259 270anti-parallel
Strand 13
A
274 284anti-parallel
Strand 14
A
323 332anti-parallel
Strand 15
A
341 353anti-parallel
Strand 16
A
372 384anti-parallel
Strand 17
A
394 404anti-parallel
Strand 18
A
422 434anti-parallel
Strand 19
A
8 23anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
95 96anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
304 305anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 178first strand
Strand 2
A
185 186anti-parallel
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There are 19 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 23first strand
Strand 2
B
31 47anti-parallel
Strand 3
B
55 69anti-parallel
Strand 4
B
98 110anti-parallel
Strand 5
B
113 120anti-parallel
Strand 6
B
138 149anti-parallel
Strand 7
B
155 167anti-parallel
Strand 8
B
189 197anti-parallel
Strand 9
B
202 211anti-parallel
Strand 10
B
215 228anti-parallel
Strand 11
B
231 244anti-parallel
Strand 12
B
259 270anti-parallel
Strand 13
B
274 284anti-parallel
Strand 14
B
323 332anti-parallel
Strand 15
B
341 353anti-parallel
Strand 16
B
372 384anti-parallel
Strand 17
B
394 404anti-parallel
Strand 18
B
422 434anti-parallel
Strand 19
B
8 23anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
95 96anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
304 305anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
185 186anti-parallel
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