Analysis of interatomic Contacts of Structural Units in PDB entry:
7VUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VUD entry

There is 1 chain in PDB entry 7VUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 6ALA 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 7VUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 38Right-handed alpha
Helix 2
AA2
A
47 55Right-handed 310
Helix 3
AA3
A
73 76Right-handed 310
Helix 4
AA4
A
96 100Right-handed 310
Helix 5
AA5
A
123 133Right-handed alpha
Helix 6
AA6
A
139 143Right-handed 310
Helix 7
AA7
A
144 161Right-handed alpha
Helix 8
AA8
A
290 297Right-handed alpha
Helix 9
AA9
A
359 364Right-handed 310
Helix 10
AB1
A
406 410Right-handed 310
Helix 11
AB2
A
533 540Right-handed alpha
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There are 9 sheets in PDB entry 7VUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
13 14anti-parallel
Strand 3
A
204 210anti-parallel
Strand 4
A
194 198anti-parallel
Strand 5
A
183 187anti-parallel
Strand 6
A
176 180anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
113 120anti-parallel
Strand 3
A
102 110anti-parallel
Strand 4
A
78 85anti-parallel
Strand 5
A
528 532anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
514 518anti-parallel
Strand 3
A
498 504anti-parallel
Strand 4
A
484 492anti-parallel
Strand 5
A
463 465anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
514 518anti-parallel
Strand 3
A
498 504anti-parallel
Strand 4
A
484 492anti-parallel
Strand 5
A
469 472anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
233 238anti-parallel
Strand 3
A
245 250anti-parallel
Strand 4
A
260 262anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
279 284anti-parallel
Strand 3
A
310 316anti-parallel
Strand 4
A
326 330anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 289first strand
Strand 2
A
302 304anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 344first strand
Strand 2
A
347 355anti-parallel
Strand 3
A
377 384anti-parallel
Strand 4
A
390 394anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 404first strand
Strand 2
A
416 423anti-parallel
Strand 3
A
427 435anti-parallel
Strand 4
A
453 458anti-parallel
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