Analysis of interatomic Contacts of Structural Units in PDB entry:
7VUK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VUK entry

There are 2 chains in PDB entry 7VUK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 488
B
 MET 1GLU 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7VUK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
9 20Right-handed alpha
Helix 3
AA3
A
23 32Right-handed alpha
Helix 4
AA4
A
37 54Right-handed alpha
Helix 5
AA5
A
62 71Right-handed alpha
Helix 6
AA6
A
78 100Right-handed alpha
Helix 7
AA7
A
104 110Right-handed alpha
Helix 8
AA8
A
111 113Right-handed 310
Helix 9
AA9
A
116 127Right-handed alpha
Helix 10
AB1
A
134 137Right-handed 310
Helix 11
AB2
A
138 143Right-handed alpha
Helix 12
AB3
A
235 247Right-handed alpha
Helix 13
AB4
A
249 274Right-handed alpha
Helix 14
AB5
A
321 337Right-handed alpha
Helix 15
AB6
A
367 385Right-handed alpha
Helix 16
AB7
A
401 420Right-handed alpha
Helix 17
AB8
A
429 437Right-handed alpha
Helix 18
AB9
A
473 478Right-handed alpha
Helix 19
AC1
B
9 20Right-handed alpha
Helix 20
AC2
B
23 32Right-handed alpha
Helix 21
AC3
B
37 54Right-handed alpha
Helix 22
AC4
B
62 74Right-handed alpha
Helix 23
AC5
B
78 100Right-handed alpha
Helix 24
AC6
B
101 103Right-handed 310
Helix 25
AC7
B
104 111Right-handed alpha
Helix 26
AC8
B
116 127Right-handed alpha
Helix 27
AC9
B
138 147Right-handed alpha
Helix 28
AD1
B
148 153Right-handed alpha
Helix 29
AD2
B
212 215Right-handed 310
Helix 30
AD3
B
216 246Right-handed alpha
Helix 31
AD4
B
248 274Right-handed alpha
Helix 32
AD5
B
320 337Right-handed alpha
Helix 33
AD6
B
369 385Right-handed alpha
Helix 34
AD7
B
403 418Right-handed alpha
Helix 35
AD8
B
429 437Right-handed alpha
Helix 36
AD9
B
469 477Right-handed alpha
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There are 6 sheets in PDB entry 7VUK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 280first strand
Strand 2
A
345 348parallel
Strand 3
A
284 289anti-parallel
Strand 4
A
300 304anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
390 396parallel
Strand 3
A
422 427parallel
Strand 4
A
310 314parallel
Strand 5
A
442 449parallel
Strand 6
A
456 462anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
181 183anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 280first strand
Strand 2
B
345 348parallel
Strand 3
B
284 287anti-parallel
Strand 4
B
303 304anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 357first strand
Strand 2
B
390 396parallel
Strand 3
B
422 427parallel
Strand 4
B
310 314parallel
Strand 5
B
442 446parallel
Strand 6
B
461 462anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
449 450first strand
Strand 2
B
455 456anti-parallel
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