Analysis of interatomic Contacts of Structural Units in PDB entry:
7VUN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VUN entry

There are 8 chains in PDB entry 7VUN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 18	HIS 143
A	ALA 18	HIS 142
C	ALA 18	HIS 143
D	ALA 18	HIS 143
E	ALA 18	HIS 142
F	ALA 18	HIS 143
G	ALA 18	HIS 142
H	ALA 18	GLU 139

There are 39 helices in PDB entry 7VUN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	49	51	Right-handed 310
Helix 2	AA2	B	78	82	Right-handed 310
Helix 3	AA3	B	91	94	Right-handed 310
Helix 4	AA4	B	105	109	Right-handed 310
Helix 5	AA5	B	133	143	Right-handed alpha
Helix 6	AA6	A	49	51	Right-handed 310
Helix 7	AA7	A	78	82	Right-handed 310
Helix 8	AA8	A	89	94	Right-handed alpha
Helix 9	AA9	A	105	109	Right-handed 310
Helix 10	AB1	A	133	142	Right-handed alpha
Helix 11	AB2	C	49	51	Right-handed 310
Helix 12	AB3	C	78	82	Right-handed 310
Helix 13	AB4	C	89	94	Right-handed 310
Helix 14	AB5	C	105	109	Right-handed 310
Helix 15	AB6	C	133	143	Right-handed alpha
Helix 16	AB7	D	49	51	Right-handed 310
Helix 17	AB8	D	78	82	Right-handed 310
Helix 18	AB9	D	89	94	Right-handed 310
Helix 19	AC1	D	105	109	Right-handed 310
Helix 20	AC2	D	133	143	Right-handed alpha
Helix 21	AC3	E	49	51	Right-handed 310
Helix 22	AC4	E	78	82	Right-handed 310
Helix 23	AC5	E	88	94	Right-handed alpha
Helix 24	AC6	E	105	109	Right-handed 310
Helix 25	AC7	E	133	142	Right-handed alpha
Helix 26	AC8	F	49	51	Right-handed 310
Helix 27	AC9	F	89	94	Right-handed 310
Helix 28	AD1	F	105	109	Right-handed 310
Helix 29	AD2	F	133	143	Right-handed alpha
Helix 30	AD3	G	49	51	Right-handed 310
Helix 31	AD4	G	78	82	Right-handed 310
Helix 32	AD5	G	88	93	Right-handed alpha
Helix 33	AD6	G	105	109	Right-handed 310
Helix 34	AD7	G	133	142	Right-handed alpha
Helix 35	AD8	H	49	52	Right-handed 310
Helix 36	AD9	H	78	82	Right-handed 310
Helix 37	AE1	H	89	94	Right-handed 310
Helix 38	AE2	H	105	109	Right-handed 310
Helix 39	AE3	H	133	138	Right-handed alpha

There are 16 sheets in PDB entry 7VUN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	121	131	parallel
Strand 3	B	110	118	anti-parallel
Strand 4	B	53	59	anti-parallel
Strand 5	B	62	68	anti-parallel
Strand 6	B	71	72	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	41	first strand
Strand 2	B	96	101	anti-parallel
Strand 3	B	85	87	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	121	131	parallel
Strand 3	A	110	118	anti-parallel
Strand 4	A	53	59	anti-parallel
Strand 5	A	62	68	anti-parallel
Strand 6	A	71	72	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	41	first strand
Strand 2	A	96	101	anti-parallel
Strand 3	A	85	87	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	121	131	parallel
Strand 3	C	110	118	anti-parallel
Strand 4	C	53	59	anti-parallel
Strand 5	C	62	68	anti-parallel
Strand 6	C	71	72	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	41	first strand
Strand 2	C	96	101	anti-parallel
Strand 3	C	85	87	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	31	first strand
Strand 2	D	121	131	parallel
Strand 3	D	110	118	anti-parallel
Strand 4	D	53	59	anti-parallel
Strand 5	D	62	68	anti-parallel
Strand 6	D	71	72	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	41	first strand
Strand 2	D	96	101	anti-parallel
Strand 3	D	85	87	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	31	first strand
Strand 2	E	121	131	parallel
Strand 3	E	110	118	anti-parallel
Strand 4	E	53	59	anti-parallel
Strand 5	E	63	68	anti-parallel
Strand 6	E	71	72	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	41	first strand
Strand 2	E	96	102	anti-parallel
Strand 3	E	85	87	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	27	31	first strand
Strand 2	F	121	131	parallel
Strand 3	F	110	118	anti-parallel
Strand 4	F	53	59	anti-parallel
Strand 5	F	62	68	anti-parallel
Strand 6	F	71	72	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	41	first strand
Strand 2	F	96	101	anti-parallel
Strand 3	F	85	88	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	31	first strand
Strand 2	G	121	131	parallel
Strand 3	G	110	118	anti-parallel
Strand 4	G	53	59	anti-parallel
Strand 5	G	62	68	anti-parallel
Strand 6	G	71	73	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	41	first strand
Strand 2	G	96	101	anti-parallel
Strand 3	G	85	87	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	31	first strand
Strand 2	H	121	131	parallel
Strand 3	H	110	117	anti-parallel
Strand 4	H	54	59	anti-parallel
Strand 5	H	62	68	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	38	first strand
Strand 2	H	98	102	anti-parallel
Strand 3	H	85	88	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VUN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VUN