Analysis of interatomic Contacts of Structural Units in PDB entry:
7VUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VUP entry

There are 4 chains in PDB entry 7VUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 34VAL 329
C
 C 1 T 17
B
 THR 34VAL 329
D
 A 2 G 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 7VUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
145 158Right-handed alpha
Helix 2
AA2
A
167 183Right-handed alpha
Helix 3
AA3
A
277 279Right-handed 310
Helix 4
AA4
B
145 158Right-handed alpha
Helix 5
AA5
B
167 183Right-handed alpha
Helix 6
AA6
B
277 279Right-handed 310
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There are 12 sheets in PDB entry 7VUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
79 83anti-parallel
Strand 3
A
130 132anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
137 140parallel
Strand 3
A
108 110anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
89 96anti-parallel
Strand 3
A
189 198anti-parallel
Strand 4
A
212 213anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
189 198anti-parallel
Strand 3
A
217 218anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
245 250anti-parallel
Strand 3
A
286 290anti-parallel
Strand 4
A
281 282anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
321 326parallel
Strand 3
A
303 310anti-parallel
Strand 4
A
259 263anti-parallel
Strand 5
A
271 273anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
79 83anti-parallel
Strand 3
B
130 132anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
137 140parallel
Strand 3
B
108 110anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
89 96anti-parallel
Strand 3
B
189 198anti-parallel
Strand 4
B
212 213anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 208first strand
Strand 2
B
189 198anti-parallel
Strand 3
B
217 218anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 233first strand
Strand 2
B
245 250anti-parallel
Strand 3
B
286 290anti-parallel
Strand 4
B
281 282anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
237 239first strand
Strand 2
B
321 326parallel
Strand 3
B
303 311anti-parallel
Strand 4
B
258 263anti-parallel
Strand 5
B
271 273anti-parallel
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