Analysis of interatomic Contacts of Structural Units in PDB entry:
7VUY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VUY entry

There are 5 chains in PDB entry 7VUY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	THR 30	LYS 287
A	CYS 3	PHE 354
B	SER 2	ASN 340
G	ALA 7	ARG 62
S	VAL 2	LEU 235

There are 27 helices in PDB entry 7VUY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	30	57	Right-handed alpha
Helix 2	AA2	R	64	94	Right-handed alpha
Helix 3	AA3	R	104	133	Right-handed alpha
Helix 4	AA4	R	133	140	Right-handed alpha
Helix 5	AA5	R	144	168	Right-handed alpha
Helix 6	AA6	R	176	213	Right-handed alpha
Helix 7	AA7	R	217	245	Right-handed alpha
Helix 8	AA8	R	245	250	Right-handed alpha
Helix 9	AA9	R	252	280	Right-handed alpha
Helix 10	AB1	R	280	285	Right-handed alpha
Helix 11	AB2	A	6	31	Right-handed alpha
Helix 12	AB3	A	45	55	Right-handed alpha
Helix 13	AB4	A	207	214	Right-handed alpha
Helix 14	AB5	A	228	230	Right-handed 310
Helix 15	AB6	A	241	255	Right-handed alpha
Helix 16	AB7	A	270	279	Right-handed alpha
Helix 17	AB8	A	282	286	Right-handed 310
Helix 18	AB9	A	295	309	Right-handed alpha
Helix 19	AC1	A	331	350	Right-handed alpha
Helix 20	AC2	B	3	26	Right-handed alpha
Helix 21	AC3	B	29	34	Right-handed alpha
Helix 22	AC4	G	8	23	Right-handed alpha
Helix 23	AC5	G	29	44	Right-handed alpha
Helix 24	AC6	S	28	32	Right-handed 310
Helix 25	AC7	S	53	56	Right-handed 310
Helix 26	AC8	S	87	91	Right-handed 310
Helix 27	AC9	S	208	212	Right-handed 310

There are 14 sheets in PDB entry 7VUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	38	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	335	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	166	168	anti-parallel
Strand 4	B	178	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	220	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	263	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	278	first strand
Strand 2	B	284	287	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	18	25	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	58	60	first strand
Strand 2	S	45	51	anti-parallel
Strand 3	S	33	39	anti-parallel
Strand 4	S	92	99	anti-parallel
Strand 5	S	110	111	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	58	60	first strand
Strand 2	S	45	51	anti-parallel
Strand 3	S	33	39	anti-parallel
Strand 4	S	92	99	anti-parallel
Strand 5	S	115	117	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	129	130	first strand
Strand 2	S	143	148	anti-parallel
Strand 3	S	199	204	anti-parallel
Strand 4	S	191	194	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	134	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	214	215	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	182	183	first strand
Strand 2	S	173	178	anti-parallel
Strand 3	S	162	167	anti-parallel
Strand 4	S	217	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VUY

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VUY