Analysis of interatomic Contacts of Structural Units in PDB entry:
7VVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7VVD entry

There are 4 chains in PDB entry 7VVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 365ARG 533
C
 ASP 2ALA 147
D
 ASN 365ALA 532
E
 ASP 2MET 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7VVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
366 384Right-handed alpha
Helix 2
AA2
A
389 395Right-handed 310
Helix 3
AA3
A
507 531Right-handed alpha
Helix 4
AA4
C
7 20Right-handed alpha
Helix 5
AA5
C
28 39Right-handed alpha
Helix 6
AA6
C
44 56Right-handed alpha
Helix 7
AA7
C
65 73Right-handed alpha
Helix 8
AA8
C
79 91Right-handed alpha
Helix 9
AA9
C
101 112Right-handed alpha
Helix 10
AB1
C
117 128Right-handed alpha
Helix 11
AB2
C
138 147Right-handed alpha
Helix 12
AB3
D
366 384Right-handed alpha
Helix 13
AB4
D
389 394Right-handed 310
Helix 14
AB5
D
507 531Right-handed alpha
Helix 15
AB6
E
5 20Right-handed alpha
Helix 16
AB7
E
28 39Right-handed alpha
Helix 17
AB8
E
44 56Right-handed alpha
Helix 18
AB9
E
65 73Right-handed alpha
Helix 19
AC1
E
81 91Right-handed alpha
Helix 20
AC2
E
101 112Right-handed alpha
Helix 21
AC3
E
117 127Right-handed alpha
Helix 22
AC4
E
138 145Right-handed alpha
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There are 4 sheets in PDB entry 7VVD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 27first strand
Strand 2
C
63 64anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
99 100first strand
Strand 2
C
136 137anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
26 27first strand
Strand 2
E
63 64anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
99 100first strand
Strand 2
E
136 137anti-parallel
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