Analysis of interatomic Contacts of Structural Units in PDB entry:
7VVL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VVL entry

There are 6 chains in PDB entry 7VVL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	LEU 384
B	GLN 6	ASN 340
G	ALA 10	ARG 62
N	GLN 1	SER 128
P	SER 1	PHE 34
R	VAL 31	TRP 477

There are 30 helices in PDB entry 7VVL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	39	Right-handed alpha
Helix 2	AA2	A	52	60	Right-handed alpha
Helix 3	AA3	A	233	239	Right-handed 310
Helix 4	AA4	A	255	268	Right-handed alpha
Helix 5	AA5	A	283	294	Right-handed alpha
Helix 6	AA6	A	297	302	Right-handed alpha
Helix 7	AA7	A	303	308	Right-handed 310
Helix 8	AA8	A	321	343	Right-handed alpha
Helix 9	AA9	A	361	381	Right-handed alpha
Helix 10	AB1	B	7	24	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	G	11	24	Right-handed alpha
Helix 13	AB4	G	29	44	Right-handed alpha
Helix 14	AB5	N	28	32	Right-handed 310
Helix 15	AB6	N	87	91	Right-handed 310
Helix 16	AB7	P	2	34	Right-handed alpha
Helix 17	AB8	R	33	49	Right-handed alpha
Helix 18	AB9	R	179	212	Right-handed alpha
Helix 19	AC1	R	213	216	Right-handed 310
Helix 20	AC2	R	217	245	Right-handed alpha
Helix 21	AC3	R	279	312	Right-handed alpha
Helix 22	AC4	R	320	344	Right-handed alpha
Helix 23	AC5	R	356	359	Right-handed 310
Helix 24	AC6	R	360	391	Right-handed alpha
Helix 25	AC7	R	398	400	Right-handed 310
Helix 26	AC8	R	401	413	Right-handed alpha
Helix 27	AC9	R	413	418	Right-handed alpha
Helix 28	AD1	R	419	423	Right-handed 310
Helix 29	AD2	R	434	461	Right-handed alpha
Helix 30	AD3	R	463	477	Right-handed alpha

There are 12 sheets in PDB entry 7VVL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	276	282	parallel
Strand 6	A	349	353	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	122	125	anti-parallel
Strand 4	B	134	137	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	165	169	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	98	anti-parallel
Strand 5	N	122	124	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	111	112	first strand
Strand 2	R	117	118	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	128	130	first strand
Strand 2	R	143	145	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VVL

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VVL