Analysis of interatomic Contacts of Structural Units in PDB entry:
7VVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VVM entry

There are 6 chains in PDB entry 7VVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	LEU 384
B	GLN 6	ASN 340
G	ILE 9	ARG 62
N	GLN 1	SER 128
P	SER 1	HIS 32
R	VAL 31	TRP 477

There are 28 helices in PDB entry 7VVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	40	Right-handed alpha
Helix 2	AA2	A	52	60	Right-handed alpha
Helix 3	AA3	A	234	238	Right-handed 310
Helix 4	AA4	A	255	268	Right-handed alpha
Helix 5	AA5	A	283	294	Right-handed alpha
Helix 6	AA6	A	297	301	Right-handed 310
Helix 7	AA7	A	302	308	Right-handed 310
Helix 8	AA8	A	321	343	Right-handed alpha
Helix 9	AA9	A	362	381	Right-handed alpha
Helix 10	AB1	B	7	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	G	10	24	Right-handed alpha
Helix 13	AB4	G	29	44	Right-handed alpha
Helix 14	AB5	G	45	48	Right-handed 310
Helix 15	AB6	N	28	32	Right-handed 310
Helix 16	AB7	N	87	91	Right-handed 310
Helix 17	AB8	P	2	32	Right-handed alpha
Helix 18	AB9	R	33	49	Right-handed alpha
Helix 19	AC1	R	179	212	Right-handed alpha
Helix 20	AC2	R	213	216	Right-handed 310
Helix 21	AC3	R	217	245	Right-handed alpha
Helix 22	AC4	R	279	312	Right-handed alpha
Helix 23	AC5	R	320	347	Right-handed alpha
Helix 24	AC6	R	357	359	Right-handed 310
Helix 25	AC7	R	360	391	Right-handed alpha
Helix 26	AC8	R	399	418	Right-handed alpha
Helix 27	AC9	R	434	461	Right-handed alpha
Helix 28	AD1	R	463	477	Right-handed alpha

There are 12 sheets in PDB entry 7VVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	276	277	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	214	first strand
Strand 2	A	217	223	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	280	282	parallel
Strand 6	A	352	353	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	330	anti-parallel
Strand 4	B	317	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	122	125	anti-parallel
Strand 4	B	134	137	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	97	anti-parallel
Strand 4	N	35	39	anti-parallel
Strand 5	N	45	50	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	126	130	first strand
Strand 2	R	143	147	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VVM