Analysis of interatomic Contacts of Structural Units in PDB entry:
7VVN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VVN entry

There are 6 chains in PDB entry 7VVN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 12	LEU 384
B	GLU 3	ASN 340
G	ALA 7	ARG 62
N	GLN 1	SER 128
P	SER 1	PHE 34
R	THR 33	ALA 480

There are 34 helices in PDB entry 7VVN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	40	Right-handed alpha
Helix 2	AA2	A	52	60	Right-handed alpha
Helix 3	AA3	A	234	238	Right-handed 310
Helix 4	AA4	A	252	268	Right-handed alpha
Helix 5	AA5	A	283	294	Right-handed alpha
Helix 6	AA6	A	297	302	Right-handed alpha
Helix 7	AA7	A	303	308	Right-handed 310
Helix 8	AA8	A	321	343	Right-handed alpha
Helix 9	AA9	A	363	382	Right-handed alpha
Helix 10	AB1	B	4	26	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	G	8	24	Right-handed alpha
Helix 13	AB4	G	29	44	Right-handed alpha
Helix 14	AB5	G	45	48	Right-handed 310
Helix 15	AB6	N	87	91	Right-handed 310
Helix 16	AB7	P	2	15	Right-handed alpha
Helix 17	AB8	P	16	19	Right-handed 310
Helix 18	AB9	P	20	34	Right-handed alpha
Helix 19	AC1	R	34	49	Right-handed alpha
Helix 20	AC2	R	182	207	Right-handed alpha
Helix 21	AC3	R	208	211	Right-handed 310
Helix 22	AC4	R	219	244	Right-handed alpha
Helix 23	AC5	R	280	312	Right-handed alpha
Helix 24	AC6	R	321	326	Right-handed alpha
Helix 25	AC7	R	329	346	Right-handed alpha
Helix 26	AC8	R	364	379	Right-handed alpha
Helix 27	AC9	R	381	391	Right-handed alpha
Helix 28	AD1	R	401	413	Right-handed alpha
Helix 29	AD2	R	418	420	Right-handed 310
Helix 30	AD3	R	421	426	Right-handed alpha
Helix 31	AD4	R	437	451	Right-handed alpha
Helix 32	AD5	R	452	454	Right-handed 310
Helix 33	AD6	R	455	461	Right-handed alpha
Helix 34	AD7	R	463	480	Right-handed alpha

There are 11 sheets in PDB entry 7VVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	213	214	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	276	282	parallel
Strand 6	A	352	353	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	105	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	122	125	anti-parallel
Strand 4	B	135	137	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	303	304	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	320	first strand
Strand 2	B	327	329	anti-parallel
Strand 3	B	337	339	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	20	25	anti-parallel
Strand 3	N	78	81	anti-parallel
Strand 4	N	71	73	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	50	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VVN

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VVN