Analysis of interatomic Contacts of Structural Units in PDB entry:
7VVU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7VVU entry

There are 13 chains in PDB entry 7VVU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Y	MET 1	HIS 46
V	MET 1	GLU 113
T	THR 123	ARG 396
O	PRO 38	GLU 133
Q	LEU 22	GLY 101
S	ALA 12	PRO 117
U	ARG 33	ALA 124
A	ARG 40	GLU 133
B	LYS 16	GLY 102
N	ALA 12	PRO 117
D	SER 32	ALA 124
P	ASN 168	THR 437
W	G -32	A 20

There are 64 helices in PDB entry 7VVU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Y	1	45	Right-handed alpha
Helix 2	AA2	V	2	16	Right-handed alpha
Helix 3	AA3	V	16	57	Right-handed alpha
Helix 4	AA4	V	64	113	Right-handed alpha
Helix 5	AA5	T	132	137	Right-handed alpha
Helix 6	AA6	T	154	158	Right-handed 310
Helix 7	AA7	T	165	176	Right-handed alpha
Helix 8	AA8	T	185	204	Right-handed alpha
Helix 9	AA9	T	206	214	Right-handed 310
Helix 10	AB1	T	216	227	Right-handed alpha
Helix 11	AB2	T	228	230	Right-handed 310
Helix 12	AB3	T	231	242	Right-handed alpha
Helix 13	AB4	T	255	260	Right-handed 310
Helix 14	AB5	T	263	286	Right-handed alpha
Helix 15	AB6	T	313	317	Right-handed 310
Helix 16	AB7	T	327	383	Right-handed alpha
Helix 17	AB8	T	388	392	Right-handed 310
Helix 18	AB9	O	44	57	Right-handed alpha
Helix 19	AC1	O	63	77	Right-handed alpha
Helix 20	AC2	O	85	114	Right-handed alpha
Helix 21	AC3	O	120	132	Right-handed alpha
Helix 22	AC4	Q	24	29	Right-handed 310
Helix 23	AC5	Q	30	42	Right-handed alpha
Helix 24	AC6	Q	49	76	Right-handed alpha
Helix 25	AC7	Q	82	93	Right-handed alpha
Helix 26	AC8	S	16	22	Right-handed alpha
Helix 27	AC9	S	26	36	Right-handed alpha
Helix 28	AD1	S	45	73	Right-handed alpha
Helix 29	AD2	S	79	90	Right-handed alpha
Helix 30	AD3	S	90	97	Right-handed alpha
Helix 31	AD4	S	112	116	Right-handed 310
Helix 32	AD5	U	37	49	Right-handed alpha
Helix 33	AD6	U	55	84	Right-handed alpha
Helix 34	AD7	U	90	102	Right-handed alpha
Helix 35	AD8	U	103	123	Right-handed alpha
Helix 36	AD9	A	44	57	Right-handed alpha
Helix 37	AE1	A	63	77	Right-handed alpha
Helix 38	AE2	A	85	114	Right-handed alpha
Helix 39	AE3	A	120	132	Right-handed alpha
Helix 40	AE4	B	19	23	Right-handed 310
Helix 41	AE5	B	24	29	Right-handed 310
Helix 42	AE6	B	30	41	Right-handed alpha
Helix 43	AE7	B	49	76	Right-handed alpha
Helix 44	AE8	B	82	93	Right-handed alpha
Helix 45	AE9	N	16	22	Right-handed alpha
Helix 46	AF1	N	26	36	Right-handed alpha
Helix 47	AF2	N	45	73	Right-handed alpha
Helix 48	AF3	N	79	90	Right-handed alpha
Helix 49	AF4	N	90	97	Right-handed alpha
Helix 50	AF5	N	112	116	Right-handed 310
Helix 51	AF6	D	37	49	Right-handed alpha
Helix 52	AF7	D	55	84	Right-handed alpha
Helix 53	AF8	D	90	102	Right-handed alpha
Helix 54	AF9	D	103	124	Right-handed alpha
Helix 55	AG1	P	186	191	Right-handed alpha
Helix 56	AG2	P	207	218	Right-handed alpha
Helix 57	AG3	P	244	257	Right-handed alpha
Helix 58	AG4	P	309	312	Right-handed 310
Helix 59	AG5	P	315	331	Right-handed alpha
Helix 60	AG6	P	342	365	Right-handed alpha
Helix 61	AG7	P	369	378	Right-handed alpha
Helix 62	AG8	P	380	391	Right-handed alpha
Helix 63	AG9	P	406	420	Right-handed alpha
Helix 64	AH1	P	425	429	Right-handed 310

There are 14 sheets in PDB entry 7VVU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	128	129	first strand
Strand 2	P	175	177	anti-parallel
Strand 3	P	170	172	anti-parallel
Strand 4	P	195	197	parallel
Strand 5	P	204	205	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	83	84	first strand
Strand 2	Q	80	81	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	118	119	first strand
Strand 2	Q	45	46	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	96	98	first strand
Strand 2	N	100	102	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	42	43	first strand
Strand 2	U	88	89	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	77	78	first strand
Strand 2	U	53	54	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	100	102	first strand
Strand 2	B	96	98	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	77	78	first strand
Strand 2	D	53	54	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	226	230	first strand
Strand 2	P	234	240	anti-parallel
Strand 3	P	271	279	anti-parallel
Strand 4	P	284	293	anti-parallel
Strand 5	P	305	307	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	300	302	first strand
Strand 2	P	336	337	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	394	396	first strand
Strand 2	P	401	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7VVU

Analysis of interatomic Contacts of Structural Units in PDB entry:
7VVU